Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10735499	0.80[ASN][1000 genomes]
rs11118705	0.89[ASN][1000 genomes]
rs11118706	0.89[ASN][1000 genomes]
rs12084980	0.89[ASN][1000 genomes]
rs3123736	0.89[ASN][1000 genomes]
rs3131543	0.89[ASN][1000 genomes]
rs41349545	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4517352	0.89[ASN][1000 genomes]
rs4609434	0.89[ASN][1000 genomes]
rs6679291	0.96[ASN][1000 genomes]
rs6697087	0.89[ASN][1000 genomes]
rs72744240	0.89[ASN][1000 genomes]
rs72744253	0.89[ASN][1000 genomes]
rs72744259	0.93[ASN][1000 genomes]
rs72744270	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72746037	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72746040	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72746060	0.86[ASN][1000 genomes]
rs72746061	0.86[ASN][1000 genomes]
rs72746075	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs731372	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7552266	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221482600-221494400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:221485200-221488600	Weak transcription	Fetal Lung	lung
3	chr1:221486800-221488600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr1:221487400-221488400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr1:221487400-221488600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr1:221487800-221488400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr1:221487800-221488800	Enhancers	NHDF-Ad	bronchial
8	chr1:221487800-221490600	Enhancers	Osteobl	bone
9	chr1:221487800-221490800	Enhancers	Hela-S3	cervix

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