Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10489951	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11118705	0.86[ASN][1000 genomes]
rs11118706	0.86[ASN][1000 genomes]
rs12084980	0.86[ASN][1000 genomes]
rs3123736	0.86[ASN][1000 genomes]
rs3131543	0.86[ASN][1000 genomes]
rs4517352	0.86[ASN][1000 genomes]
rs4609434	0.86[ASN][1000 genomes]
rs6679291	0.93[ASN][1000 genomes]
rs6697087	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs72744240	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs72744253	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs72744259	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs72744270	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72746037	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72746040	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72746060	0.83[ASN][1000 genomes]
rs72746061	0.83[ASN][1000 genomes]
rs72746075	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs731372	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7552266	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221475400-221478400	Enhancers	Fetal Lung	lung
2	chr1:221476400-221479600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr1:221476600-221480200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr1:221476800-221478200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr1:221477200-221478600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr1:221477200-221483600	Weak transcription	HUES6 Cell Line	embryonic stem cell

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