Variant report
| Variant | rs72744270 |
|---|---|
| Chromosome Location | chr1:221491218-221491219 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10489951 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10735499 | 0.80[ASN][1000 genomes] |
| rs11118705 | 0.89[ASN][1000 genomes] |
| rs11118706 | 0.89[ASN][1000 genomes] |
| rs12084980 | 0.89[ASN][1000 genomes] |
| rs3123736 | 0.89[ASN][1000 genomes] |
| rs3131543 | 0.89[ASN][1000 genomes] |
| rs41349545 | 0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs4517352 | 0.89[ASN][1000 genomes] |
| rs4609434 | 0.89[ASN][1000 genomes] |
| rs6679291 | 0.96[ASN][1000 genomes] |
| rs6697087 | 0.89[ASN][1000 genomes] |
| rs72744240 | 0.89[ASN][1000 genomes] |
| rs72744253 | 0.89[ASN][1000 genomes] |
| rs72744259 | 0.93[ASN][1000 genomes] |
| rs72746037 | 0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs72746040 | 0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs72746060 | 0.86[ASN][1000 genomes] |
| rs72746061 | 0.86[ASN][1000 genomes] |
| rs72746075 | 0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs731372 | 0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs7552266 | 0.89[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv997685 | chr1:220993527-221863416 | Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 28 gene(s) | inside rSNPs | diseases |
| 2 | nsv535299 | chr1:220993527-221863416 | Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 28 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:221482600-221494400 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
