Variant report

Variant	rs10490235
Chromosome Location	chr2:50426319-50426320
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10490237	1.00[YRI][hapmap]
rs10495982	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12468665	0.85[CEU][hapmap]
rs12470857	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12476510	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12478889	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12479013	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17040190	1.00[CEU][hapmap]
rs17040199	1.00[CEU][hapmap]
rs17447792	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs17447848	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs17461653	0.85[CEU][hapmap];1.00[YRI][hapmap]
rs17461897	0.85[CEU][hapmap];1.00[YRI][hapmap]
rs17462099	0.82[CEU][hapmap];1.00[YRI][hapmap]
rs17463187	0.82[CEU][hapmap];1.00[YRI][hapmap]
rs17496539	1.00[YRI][hapmap]
rs17505397	1.00[YRI][hapmap]
rs17505495	1.00[YRI][hapmap]
rs17505611	1.00[YRI][hapmap]
rs17507002	1.00[CEU][hapmap]
rs17507317	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17508400	0.85[CEU][hapmap];1.00[YRI][hapmap]
rs17508435	0.82[CEU][hapmap]
rs17508684	0.85[CEU][hapmap];1.00[YRI][hapmap]
rs1915220	1.00[YRI][hapmap]
rs2078232	1.00[YRI][hapmap]
rs57947630	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7598842	0.82[CEU][hapmap]
rs7602425	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3388948	chr2:50092667-50602681	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
2	esv3399511	chr2:50092687-50602651	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv932915	chr2:50306630-50628415	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv2756107	chr2:50307245-50440043	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv948833	chr2:50307245-50459077	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1002344	chr2:50326207-50518933	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv535692	chr2:50326207-50518933	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv492164	chr2:50399251-51029090	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv581839	chr2:50409803-50438701	Enhancers Flanking Active TSS Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
10	nsv1000653	chr2:50417660-51083470	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv535693	chr2:50417660-51083470	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:50425000-50426400	Enhancers	iPS-20b Cell Line	embryonic stem cell
2	chr2:50425800-50426800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr2:50426200-50429200	Weak transcription	H9 Cell Line	embryonic stem cell

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