Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10490235	1.00[YRI][hapmap]
rs10490237	1.00[ASW][hapmap];1.00[YRI][hapmap];0.80[EUR][1000 genomes]
rs10495982	1.00[YRI][hapmap]
rs12467877	0.82[EUR][1000 genomes]
rs17039703	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17445771	0.91[EUR][1000 genomes]
rs17446158	0.80[EUR][1000 genomes]
rs17447792	1.00[YRI][hapmap]
rs17447848	1.00[YRI][hapmap]
rs17461653	1.00[YRI][hapmap]
rs17461897	1.00[YRI][hapmap]
rs17462099	1.00[YRI][hapmap]
rs17463187	1.00[YRI][hapmap]
rs17496470	1.00[CEU][hapmap];1.00[GIH][hapmap];0.95[TSI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17496539	1.00[CEU][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17505397	1.00[YRI][hapmap]
rs17505495	1.00[YRI][hapmap];0.80[EUR][1000 genomes]
rs17505611	1.00[ASW][hapmap];1.00[YRI][hapmap];0.80[EUR][1000 genomes]
rs17507317	1.00[YRI][hapmap]
rs17508400	1.00[YRI][hapmap]
rs17508684	1.00[YRI][hapmap]
rs1915220	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3388948	chr2:50092667-50602681	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
2	esv3399511	chr2:50092687-50602651	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv934303	chr2:50145598-50412189	Bivalent Enhancer Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:50293000-50296600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr2:50296200-50296400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr2:50296200-50296400	Enhancers	Fetal Heart	heart
4	chr2:50296200-50296600	Enhancers	Brain Anterior Caudate	brain

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