Variant report
| Variant | rs17496539 |
|---|---|
| Chromosome Location | chr2:50298435-50298436 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10490235 | 1.00[YRI][hapmap] |
| rs10490237 | 1.00[YRI][hapmap];0.80[EUR][1000 genomes] |
| rs10495982 | 1.00[YRI][hapmap] |
| rs12467877 | 0.82[EUR][1000 genomes] |
| rs17039703 | 1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs17445771 | 0.91[EUR][1000 genomes] |
| rs17446158 | 0.80[EUR][1000 genomes] |
| rs17447792 | 1.00[YRI][hapmap] |
| rs17447848 | 1.00[YRI][hapmap] |
| rs17461653 | 1.00[YRI][hapmap] |
| rs17461897 | 1.00[YRI][hapmap] |
| rs17462099 | 1.00[YRI][hapmap] |
| rs17463187 | 1.00[YRI][hapmap] |
| rs17496470 | 1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs17505397 | 1.00[YRI][hapmap] |
| rs17505495 | 1.00[YRI][hapmap];0.80[EUR][1000 genomes] |
| rs17505611 | 1.00[YRI][hapmap];0.80[EUR][1000 genomes] |
| rs17507317 | 1.00[YRI][hapmap] |
| rs17508400 | 1.00[YRI][hapmap] |
| rs17508684 | 1.00[YRI][hapmap] |
| rs1915220 | 1.00[YRI][hapmap] |
| rs2078232 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3388948 | chr2:50092667-50602681 | Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionmiRNA target site | 4 gene(s) | inside rSNPs | diseases |
| 2 | esv3399511 | chr2:50092687-50602651 | Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionmiRNA target site | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv934303 | chr2:50145598-50412189 | Bivalent Enhancer Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionmiRNA target site | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:50296600-50301600 | Weak transcription | Foreskin Melanocyte Primary Cells skin03 | Skin |
