Variant report

Variant	rs10490298
Chromosome Location	chr2:206105728-206105729
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10490297	1.00[CHB][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs11889661	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11889706	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11893793	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11901441	0.82[ASN][1000 genomes]
rs16837107	0.81[EUR][1000 genomes]
rs16837123	1.00[CHB][hapmap];0.83[EUR][1000 genomes]
rs16837126	1.00[CHB][hapmap];0.90[YRI][hapmap];0.82[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs60497611	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6733664	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73068910	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs73068912	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs73068913	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998485	chr2:205407813-206184006	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv536122	chr2:205407813-206184006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv16739	chr2:205898770-206127984	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:206085800-206120800	Weak transcription	Left Ventricle	heart
2	chr2:206090000-206110600	Weak transcription	Brain Anterior Caudate	brain
3	chr2:206093200-206113200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr2:206094600-206116000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr2:206095800-206113200	Weak transcription	Liver	Liver
6	chr2:206097200-206109200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr2:206097200-206109600	Weak transcription	Ovary	ovary
8	chr2:206097200-206118000	Weak transcription	Aorta	Aorta
9	chr2:206097200-206170600	Weak transcription	HSMMtube	muscle
10	chr2:206097800-206106400	Weak transcription	HSMM	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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