Variant report

Variant	rs11889706
Chromosome Location	chr2:206093520-206093521
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10490298	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11889661	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11893793	0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11901441	0.85[ASN][1000 genomes]
rs16837107	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60497611	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6733664	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998485	chr2:205407813-206184006	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv536122	chr2:205407813-206184006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv16739	chr2:205898770-206127984	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:206075200-206100000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr2:206081000-206098600	Weak transcription	Fetal Lung	lung
3	chr2:206081400-206094200	Weak transcription	Fetal Intestine Small	intestine
4	chr2:206082400-206100800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr2:206083000-206100400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr2:206085800-206120800	Weak transcription	Left Ventricle	heart
7	chr2:206089200-206094200	Weak transcription	Fetal Stomach	stomach
8	chr2:206089400-206096600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr2:206090000-206110600	Weak transcription	Brain Anterior Caudate	brain
10	chr2:206092000-206094600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr2:206092400-206094200	Weak transcription	Pancreas	Pancrea
12	chr2:206092400-206096200	Weak transcription	HSMM	muscle
13	chr2:206092600-206094200	Weak transcription	Stomach Smooth Muscle	stomach
14	chr2:206092800-206096400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr2:206092800-206096600	Weak transcription	Aorta	Aorta
16	chr2:206093200-206098400	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr2:206093200-206113200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr2:206093400-206102200	Weak transcription	Adipose Nuclei	Adipose

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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