Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10490297	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs10490298	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11886173	0.81[ASN][1000 genomes]
rs11889661	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11889706	0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11890174	0.81[ASN][1000 genomes]
rs11890764	0.81[ASN][1000 genomes]
rs11895225	0.81[ASN][1000 genomes]
rs11895487	0.81[ASN][1000 genomes]
rs11896884	0.81[ASN][1000 genomes]
rs11904275	0.81[ASN][1000 genomes]
rs16837107	0.81[ASN][1000 genomes]
rs16837126	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs60497611	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61260715	0.81[ASN][1000 genomes]
rs62171467	0.86[AMR][1000 genomes]
rs6733664	0.81[ASN][1000 genomes]
rs73068910	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs73068912	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs73068913	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998485	chr2:205407813-206184006	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv536122	chr2:205407813-206184006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv16739	chr2:205898770-206127984	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:206085800-206120800	Weak transcription	Left Ventricle	heart
2	chr2:206090000-206110600	Weak transcription	Brain Anterior Caudate	brain
3	chr2:206093200-206113200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr2:206094600-206116000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr2:206095800-206113200	Weak transcription	Liver	Liver
6	chr2:206097200-206109200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr2:206097200-206109600	Weak transcription	Ovary	ovary
8	chr2:206097200-206118000	Weak transcription	Aorta	Aorta
9	chr2:206097200-206170600	Weak transcription	HSMMtube	muscle
10	chr2:206097800-206106400	Weak transcription	HSMM	muscle
11	chr2:206103800-206105400	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr2:206103800-206105400	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr2:206103800-206105600	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr2:206104000-206104800	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr2:206104400-206104800	Enhancers	H9 Cell Line	embryonic stem cell
16	chr2:206104400-206105200	Enhancers	HUES48 Cell Line	embryonic stem cell

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