Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:56495147..56497223-chr2:56498821..56501572,2	K562	blood:

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1001471	0.92[CEU][hapmap];0.90[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10490397	0.82[JPT][hapmap]
rs10490400	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12613716	0.81[JPT][hapmap]
rs12623278	0.81[JPT][hapmap]
rs12713316	0.82[JPT][hapmap];0.81[EUR][1000 genomes]
rs12993884	0.82[JPT][hapmap];0.81[EUR][1000 genomes]
rs12996636	0.81[EUR][1000 genomes]
rs13003301	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13004757	0.85[JPT][hapmap]
rs13012528	0.81[JPT][hapmap]
rs13016868	0.85[JPT][hapmap]
rs13025817	0.86[JPT][hapmap]
rs13403828	0.82[JPT][hapmap]
rs13429808	0.82[JPT][hapmap]
rs17047656	0.82[JPT][hapmap];0.81[EUR][1000 genomes]
rs17047684	0.82[JPT][hapmap]
rs2111475	0.88[YRI][hapmap]
rs2111476	0.92[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2193485	0.86[JPT][hapmap]
rs2216332	0.85[JPT][hapmap]
rs35637593	0.81[EUR][1000 genomes]
rs57041406	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7563888	0.82[JPT][hapmap]
rs7576924	0.81[CHB][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7590310	0.82[JPT][hapmap]
rs7591193	0.81[EUR][1000 genomes]
rs7591392	0.81[EUR][1000 genomes]
rs969301	0.82[JPT][hapmap];0.81[EUR][1000 genomes]
rs969302	0.81[JPT][hapmap];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530516	chr2:56447922-56633505	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv522006	chr2:56496589-56545845	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv874170	chr2:56496589-56590865	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv978925	chr2:56497527-56504097	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:56486600-56505000	Weak transcription	Left Ventricle	heart
2	chr2:56487800-56506000	Weak transcription	Psoas Muscle	Psoas
3	chr2:56488000-56514000	Weak transcription	HSMM	muscle

Quick Search: