Variant report

Variant	rs57041406
Chromosome Location	chr2:56487284-56487285
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1001471	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10490397	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10490400	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10490401	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12613716	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12621959	0.85[ASN][1000 genomes]
rs12623278	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12713316	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12993884	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12994087	0.85[ASN][1000 genomes]
rs12996636	0.81[EUR][1000 genomes]
rs13003301	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13004757	0.86[ASN][1000 genomes]
rs13012528	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13016868	0.86[ASN][1000 genomes]
rs13025817	0.84[ASN][1000 genomes]
rs13026289	0.84[ASN][1000 genomes]
rs13403828	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs13429808	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17047656	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17047684	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2111476	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2193485	0.85[ASN][1000 genomes]
rs2216332	0.85[ASN][1000 genomes]
rs35637593	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7563888	0.85[ASN][1000 genomes]
rs7590310	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7591193	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7591392	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9653542	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs969301	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs969302	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530516	chr2:56447922-56633505	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:56477200-56487400	Weak transcription	Psoas Muscle	Psoas
2	chr2:56486600-56487800	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr2:56486600-56505000	Weak transcription	Left Ventricle	heart
4	chr2:56486800-56488000	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr2:56487200-56487400	Enhancers	HSMM	muscle
6	chr2:56487200-56488000	Enhancers	HSMMtube	muscle

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