Variant report

Variant	rs13016868
Chromosome Location	chr2:56488460-56488461
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1001471	0.95[JPT][hapmap];0.84[MEX][hapmap]
rs10188465	0.90[JPT][hapmap]
rs10490397	0.85[JPT][hapmap]
rs10490400	0.85[JPT][hapmap]
rs10490401	0.85[JPT][hapmap]
rs11125618	0.90[JPT][hapmap]
rs12613716	0.85[JPT][hapmap]
rs12621959	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12623053	0.82[CEU][hapmap];0.90[JPT][hapmap];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12623278	0.85[JPT][hapmap]
rs12713316	0.85[JPT][hapmap]
rs12993884	0.85[JPT][hapmap]
rs13003301	0.80[ASN][1000 genomes]
rs13004757	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13012528	0.85[JPT][hapmap]
rs13025817	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13026289	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13403828	0.85[JPT][hapmap]
rs13429808	0.85[JPT][hapmap]
rs1468914	0.90[JPT][hapmap]
rs17047656	0.85[JPT][hapmap]
rs17047684	0.85[JPT][hapmap]
rs17047705	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs2111475	0.91[CEU][hapmap];0.97[GIH][hapmap];0.95[MEX][hapmap];0.86[TSI][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2111476	0.95[JPT][hapmap];0.84[MEX][hapmap];0.86[ASN][1000 genomes]
rs2193485	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2216332	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.94[TSI][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34328210	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs36122227	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57041406	0.86[ASN][1000 genomes]
rs6727112	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6730327	0.90[JPT][hapmap]
rs6756092	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7563888	0.85[JPT][hapmap]
rs7576428	0.90[JPT][hapmap]
rs7590310	0.85[JPT][hapmap]
rs7602551	0.90[JPT][hapmap]
rs969301	0.85[JPT][hapmap]
rs969302	0.85[JPT][hapmap]
rs969303	0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530516	chr2:56447922-56633505	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:56486600-56505000	Weak transcription	Left Ventricle	heart
2	chr2:56487600-56492200	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr2:56487800-56488600	Weak transcription	Lung	lung
4	chr2:56487800-56506000	Weak transcription	Psoas Muscle	Psoas
5	chr2:56488000-56493800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr2:56488000-56514000	Weak transcription	HSMM	muscle

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