Variant report

Variant	rs10490849
Chromosome Location	chr3:144079222-144079223
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:144076844..144079505-chr3:144082991..144084942,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10490850	0.82[EUR][1000 genomes]
rs10490852	0.82[EUR][1000 genomes]
rs1102121	0.89[ASN][1000 genomes]
rs11923441	0.82[EUR][1000 genomes]
rs11926486	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11928581	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1608999	1.00[JPT][hapmap]
rs16855353	0.82[EUR][1000 genomes]
rs17208351	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs197833	0.94[ASN][1000 genomes]
rs4681255	0.93[EUR][1000 genomes]
rs73147701	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73149803	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73149804	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73149806	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73149810	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73149813	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73149814	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73149815	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73149816	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73149821	0.82[EUR][1000 genomes]
rs73149823	0.82[EUR][1000 genomes]
rs73149824	0.82[EUR][1000 genomes]
rs73149840	0.82[EUR][1000 genomes]
rs73149841	0.82[EUR][1000 genomes]
rs73149845	0.82[EUR][1000 genomes]
rs73149848	0.82[EUR][1000 genomes]
rs856797	0.85[ASN][1000 genomes]
rs856799	0.89[ASN][1000 genomes]
rs856801	0.89[ASN][1000 genomes]
rs931773	1.00[CHD][hapmap]
rs9835986	1.00[JPT][hapmap]
rs9878391	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010117	chr3:143750590-144093775	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv536748	chr3:143750590-144093775	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv532633	chr3:143802417-144440646	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv877570	chr3:143853149-144123401	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1011685	chr3:143959237-144218424	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv536751	chr3:143959237-144218424	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv591928	chr3:144050897-144822081	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:144074400-144081000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:144077600-144082800	Weak transcription	Fetal Heart	heart
3	chr3:144079200-144080200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr3:144079200-144080400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr3:144079200-144082400	Enhancers	Dnd41	blood

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