Variant report

Variant	rs16855353
Chromosome Location	chr3:144100995-144100996
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10490849	0.82[EUR][1000 genomes]
rs10490850	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10490852	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11914388	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11916021	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11921124	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11923441	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11926486	0.82[EUR][1000 genomes]
rs11928581	0.82[EUR][1000 genomes]
rs16855461	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16855481	0.90[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs16855527	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16855528	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17208351	0.82[EUR][1000 genomes]
rs4681254	0.91[ASN][1000 genomes]
rs4681255	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4681304	0.90[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs55693550	0.90[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs55777414	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60792347	0.90[AMR][1000 genomes]
rs61228095	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61602293	0.90[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs73147701	0.82[EUR][1000 genomes]
rs73149803	0.82[EUR][1000 genomes]
rs73149804	0.82[EUR][1000 genomes]
rs73149806	0.82[EUR][1000 genomes]
rs73149810	0.82[EUR][1000 genomes]
rs73149813	0.82[EUR][1000 genomes]
rs73149814	0.82[EUR][1000 genomes]
rs73149815	0.82[EUR][1000 genomes]
rs73149816	0.82[EUR][1000 genomes]
rs73149818	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73149820	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73149821	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73149823	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73149824	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73149840	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73149841	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73149845	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73149848	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73149857	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73149870	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs988283	0.90[AMR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532633	chr3:143802417-144440646	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv877570	chr3:143853149-144123401	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1011685	chr3:143959237-144218424	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv536751	chr3:143959237-144218424	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv591928	chr3:144050897-144822081	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:144099800-144101400	Enhancers	NHEK	skin
2	chr3:144100000-144101000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr3:144100000-144101200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr3:144100400-144102600	Weak transcription	Fetal Lung	lung
5	chr3:144100600-144103400	Weak transcription	Brain Substantia Nigra	brain

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