Variant report

Variant	rs61602293
Chromosome Location	chr3:144146261-144146262
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10490850	0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10490852	0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11914388	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11916021	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11921124	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11923441	0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs16855353	0.90[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs16855461	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16855481	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16855527	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16855528	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4681304	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55693550	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55777414	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60792347	1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs61228095	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs73149818	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73149820	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73149821	0.90[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs73149823	0.90[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs73149824	0.90[AMR][1000 genomes]
rs73149840	0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs73149841	0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs73149845	0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs73149848	1.00[ASN][1000 genomes]
rs73149857	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73149870	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs988283	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532633	chr3:143802417-144440646	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1011685	chr3:143959237-144218424	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv536751	chr3:143959237-144218424	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv591928	chr3:144050897-144822081	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv591929	chr3:144123401-144188561	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv1012058	chr3:144139713-144183108	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:144144600-144148400	Weak transcription	HUES48 Cell Line	embryonic stem cell

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