Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:144094616..144096887-chr3:144098743..144100818,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1019951	0.86[EUR][1000 genomes]
rs10490850	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10490852	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11916021	0.83[ASN][1000 genomes]
rs11921124	0.83[ASN][1000 genomes]
rs11923441	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs16855353	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16855461	0.83[ASN][1000 genomes]
rs16855481	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16855527	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4681254	0.91[ASN][1000 genomes]
rs4681255	1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4681304	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55693550	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55777414	0.83[ASN][1000 genomes]
rs61602293	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73149820	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73149821	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73149823	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73149824	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs73149840	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs73149841	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs73149845	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs73149848	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs73149857	0.83[ASN][1000 genomes]
rs988283	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532633	chr3:143802417-144440646	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv877570	chr3:143853149-144123401	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1011685	chr3:143959237-144218424	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv536751	chr3:143959237-144218424	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv591928	chr3:144050897-144822081	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:144098800-144100800	Enhancers	Brain Cingulate Gyrus	brain
2	chr3:144099000-144100600	Enhancers	Brain Substantia Nigra	brain
3	chr3:144099600-144100400	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr3:144099600-144100400	Enhancers	Fetal Lung	lung
5	chr3:144099800-144100200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr3:144099800-144100200	Flanking Active TSS	Liver	Liver
7	chr3:144099800-144100200	Flanking Active TSS	Brain Hippocampus Middle	brain
8	chr3:144099800-144100400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
9	chr3:144099800-144101400	Enhancers	NHEK	skin
10	chr3:144100000-144100200	Flanking Active TSS	Brain Angular Gyrus	brain
11	chr3:144100000-144100200	Flanking Active TSS	Brain Anterior Caudate	brain
12	chr3:144100000-144101000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr3:144100000-144101200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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