Variant report

Variant	rs73149824
Chromosome Location	chr3:144103169-144103170
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10490849	0.82[EUR][1000 genomes]
rs10490850	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10490852	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11914388	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11916021	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11921124	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11923441	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11926486	0.82[EUR][1000 genomes]
rs11928581	0.82[EUR][1000 genomes]
rs16855353	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16855461	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16855481	0.90[AMR][1000 genomes]
rs16855527	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16855528	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17208351	0.82[EUR][1000 genomes]
rs4681254	0.82[ASN][1000 genomes]
rs4681255	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4681304	0.90[AMR][1000 genomes]
rs55693550	0.90[AMR][1000 genomes]
rs55777414	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs60792347	0.90[AMR][1000 genomes]
rs61228095	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61602293	0.90[AMR][1000 genomes]
rs73147701	0.82[EUR][1000 genomes]
rs73149803	0.82[EUR][1000 genomes]
rs73149804	0.82[EUR][1000 genomes]
rs73149806	0.82[EUR][1000 genomes]
rs73149810	0.82[EUR][1000 genomes]
rs73149813	0.82[EUR][1000 genomes]
rs73149814	0.82[EUR][1000 genomes]
rs73149815	0.82[EUR][1000 genomes]
rs73149816	0.82[EUR][1000 genomes]
rs73149818	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs73149820	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs73149821	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73149823	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73149840	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73149841	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73149845	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73149848	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73149857	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73149870	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs988283	0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532633	chr3:143802417-144440646	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv877570	chr3:143853149-144123401	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1011685	chr3:143959237-144218424	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv536751	chr3:143959237-144218424	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv591928	chr3:144050897-144822081	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv2760759	chr3:144101799-144112161	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:144100600-144103400	Weak transcription	Brain Substantia Nigra	brain
2	chr3:144101200-144103400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr3:144101400-144103400	Weak transcription	NHEK	skin
4	chr3:144102000-144103600	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr3:144102000-144103600	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr3:144102000-144103800	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr3:144102200-144103600	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr3:144102200-144103800	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr3:144102200-144103800	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr3:144102600-144103800	Enhancers	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links