Variant report

Variant	rs10491563
Chromosome Location	chr9:21579686-21579687
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:110268028..110268940-chr9:21579308..21579808,2	HCT-116	colon:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10491564	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10964990	1.00[AFR][1000 genomes]
rs10964991	1.00[AFR][1000 genomes]
rs10964992	1.00[AFR][1000 genomes]
rs12686498	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13294656	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1351077	1.00[CEU][hapmap];1.00[AFR][1000 genomes]
rs16938465	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16938468	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4585835	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4977727	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4978118	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031432	chr9:21472601-21608774	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	122 gene(s)	inside rSNPs	diseases
2	nsv540085	chr9:21472601-21608774	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	122 gene(s)	inside rSNPs	diseases
3	nsv1029634	chr9:21542970-21765286	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv1015623	chr9:21579110-21694039	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21575800-21592200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:21577200-21585800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr9:21578000-21579800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr9:21578400-21580800	Flanking Active TSS	A549	lung
5	chr9:21578600-21579800	Enhancers	NH-A	brain
6	chr9:21578600-21579800	Enhancers	NHEK	skin
7	chr9:21578800-21579800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
8	chr9:21578800-21579800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr9:21578800-21579800	Flanking Active TSS	Hela-S3	cervix
10	chr9:21579000-21580000	Enhancers	Stomach Mucosa	stomach
11	chr9:21579200-21579800	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr9:21579200-21579800	Enhancers	Dnd41	blood
13	chr9:21579200-21579800	Flanking Active TSS	NHDF-Ad	bronchial
14	chr9:21579200-21580800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr9:21579400-21579800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
16	chr9:21579400-21579800	Enhancers	NHLF	lung
17	chr9:21579400-21580000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
18	chr9:21579400-21580000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
19	chr9:21579400-21580000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
20	chr9:21579400-21580000	Enhancers	Primary T killer memory cells from peripheral blood	blood
21	chr9:21579400-21580200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr9:21579400-21580600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr9:21579400-21582400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr9:21579400-21583000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr9:21579400-21590800	Weak transcription	HSMM	muscle
26	chr9:21579600-21579800	Enhancers	Primary T helper naive cells from peripheral blood	blood
27	chr9:21579600-21579800	Enhancers	Primary T helper cells fromperipheralblood	blood
28	chr9:21579600-21579800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr9:21579600-21579800	Enhancers	Duodenum Mucosa	Duodenum
30	chr9:21579600-21580000	Enhancers	Primary T cells from cord blood	blood
31	chr9:21579600-21580000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
32	chr9:21579600-21580000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr9:21579600-21580200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
34	chr9:21579600-21580800	Weak transcription	Fetal Intestine Small	intestine
35	chr9:21579600-21580800	Enhancers	Osteobl	bone
36	chr9:21579600-21581600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr9:21579600-21583000	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr9:21579600-21583200	Weak transcription	HMEC	breast
39	chr9:21579600-21589400	Weak transcription	HUVEC	blood vessel

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links