Variant report

Variant	rs4977727
Chromosome Location	chr9:21582762-21582763
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:26202267..26202833-chr9:21582216..21582914,2	HCT-116	colon:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10491563	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10491564	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10964990	1.00[AFR][1000 genomes]
rs10964991	1.00[AFR][1000 genomes]
rs10964992	1.00[AFR][1000 genomes]
rs12685827	0.97[ASN][1000 genomes]
rs12686498	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13294656	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1351077	1.00[CEU][hapmap];1.00[AFR][1000 genomes]
rs16938462	0.97[ASN][1000 genomes]
rs16938465	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16938468	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4585835	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4978118	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031432	chr9:21472601-21608774	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	122 gene(s)	inside rSNPs	diseases
2	nsv540085	chr9:21472601-21608774	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	122 gene(s)	inside rSNPs	diseases
3	nsv1029634	chr9:21542970-21765286	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv1015623	chr9:21579110-21694039	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21575800-21592200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:21577200-21585800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr9:21579400-21583000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr9:21579400-21590800	Weak transcription	HSMM	muscle
5	chr9:21579600-21583000	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr9:21579600-21583200	Weak transcription	HMEC	breast
7	chr9:21579600-21589400	Weak transcription	HUVEC	blood vessel
8	chr9:21579800-21583000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr9:21579800-21583200	Weak transcription	NHEK	skin
10	chr9:21579800-21585800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr9:21579800-21585800	Weak transcription	NH-A	brain
12	chr9:21580000-21594800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr9:21580200-21582800	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr9:21581200-21582800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr9:21581200-21583400	Enhancers	Hela-S3	cervix
16	chr9:21581400-21587000	Enhancers	Osteobl	bone
17	chr9:21581600-21582800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr9:21582400-21582800	Enhancers	NHDF-Ad	bronchial
19	chr9:21582400-21583000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr9:21582400-21583200	Enhancers	Primary T killer memory cells from peripheral blood	blood
21	chr9:21582400-21583200	Enhancers	NHLF	lung
22	chr9:21582400-21583400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr9:21582400-21584600	Transcr. at gene 5' and 3'	A549	lung
24	chr9:21582600-21583000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr9:21582600-21583000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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