Variant report

Variant	rs10964990
Chromosome Location	chr9:21434678-21434679
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:21434162..21434698-chr9:21455012..21455833,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000238271	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10491563	1.00[AFR][1000 genomes]
rs10491564	1.00[AFR][1000 genomes]
rs10811546	1.00[CHB][hapmap];0.92[JPT][hapmap]
rs10811551	0.84[CHB][hapmap]
rs10811557	0.92[CHB][hapmap]
rs10964991	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10964992	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10965000	0.87[ASN][1000 genomes]
rs10965020	0.82[CHB][hapmap]
rs10965021	0.92[CHB][hapmap];0.94[GIH][hapmap]
rs10965022	0.92[CHB][hapmap]
rs10965023	0.92[CHB][hapmap]
rs10965037	0.92[CHB][hapmap]
rs12236551	1.00[CHB][hapmap];0.92[JPT][hapmap]
rs12686498	1.00[AFR][1000 genomes]
rs13294656	1.00[AFR][1000 genomes]
rs1351077	1.00[AFR][1000 genomes]
rs1412396	0.92[CHB][hapmap];0.94[GIH][hapmap];0.92[JPT][hapmap]
rs1412397	1.00[CHB][hapmap];0.92[JPT][hapmap]
rs16938465	1.00[AFR][1000 genomes]
rs16938468	1.00[AFR][1000 genomes]
rs4585835	1.00[AFR][1000 genomes]
rs4977727	1.00[AFR][1000 genomes]
rs4978118	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4978119	0.87[ASN][1000 genomes]
rs7030231	0.83[CHB][hapmap];0.92[JPT][hapmap]
rs7034161	0.92[CHB][hapmap]
rs7048384	0.92[CHB][hapmap];0.92[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892724	chr9:20690244-21517302	Genic enhancers Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	153 gene(s)	inside rSNPs	diseases
2	esv2752289	chr9:21361957-21499624	Weak transcription Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv466297	chr9:21391698-21507589	Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv613758	chr9:21391698-21507589	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv892739	chr9:21407250-21470520	Weak transcription Bivalent Enhancer ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21434600-21435000	Enhancers	A549	lung

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