Variant report

Variant	rs10811557
Chromosome Location	chr9:21519295-21519296
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:61583818..61584553-chr9:21518322..21519322,2	HCT-116	colon:

Variant related genes	Relation type
ENSG00000149485	Chromatin interaction
ENSG00000134824	Chromatin interaction

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10811546	0.92[CHB][hapmap];0.84[JPT][hapmap]
rs10811551	0.92[CHB][hapmap]
rs10811555	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10811562	0.89[AMR][1000 genomes]
rs10811563	0.89[AMR][1000 genomes]
rs10811564	0.87[AMR][1000 genomes]
rs10811565	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10811566	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10811568	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10811570	0.88[ASN][1000 genomes]
rs10964990	0.92[CHB][hapmap]
rs10965008	0.84[CHB][hapmap]
rs10965021	0.84[CHB][hapmap]
rs10965022	0.84[CHB][hapmap]
rs10965023	0.84[CHB][hapmap]
rs10965037	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs10965045	0.93[ASN][1000 genomes]
rs10965046	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10965049	0.88[GIH][hapmap]
rs10965050	0.81[AMR][1000 genomes]
rs10965051	0.92[ASN][1000 genomes]
rs10965053	0.87[AMR][1000 genomes]
rs10965054	0.87[AMR][1000 genomes]
rs10965060	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12236551	0.92[CHB][hapmap];0.84[JPT][hapmap]
rs12378286	0.89[AMR][1000 genomes]
rs12378990	0.87[AMR][1000 genomes]
rs12379382	0.89[AMR][1000 genomes]
rs12379709	0.89[AMR][1000 genomes]
rs12379721	0.89[AMR][1000 genomes]
rs1412396	0.84[CHB][hapmap];0.84[JPT][hapmap]
rs1412397	0.92[CHB][hapmap];0.84[JPT][hapmap]
rs16938435	0.83[AMR][1000 genomes]
rs16938448	0.87[AMR][1000 genomes]
rs55683539	0.81[AMR][1000 genomes]
rs7026731	0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7030231	0.84[JPT][hapmap]
rs7034161	1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[MEX][hapmap]
rs7041183	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7048384	0.84[CHB][hapmap];0.84[JPT][hapmap]
rs72703442	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72703444	0.97[EUR][1000 genomes]
rs72703447	0.87[AMR][1000 genomes]
rs72703448	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs72703449	0.87[AMR][1000 genomes]
rs72703450	0.89[AMR][1000 genomes]
rs7861480	0.87[CEU][hapmap]
rs9644820	0.92[ASN][1000 genomes]
rs9644855	0.87[AMR][1000 genomes]
rs9644856	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030064	chr9:21455760-21524674	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA miRNA	111 gene(s)	inside rSNPs	diseases
2	nsv1020445	chr9:21464962-21524162	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA miRNA	109 gene(s)	inside rSNPs	diseases
3	nsv1020232	chr9:21464962-21524999	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA miRNA	110 gene(s)	inside rSNPs	diseases
4	nsv892740	chr9:21471499-21551513	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA miRNA	110 gene(s)	inside rSNPs	diseases
5	nsv1031432	chr9:21472601-21608774	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	122 gene(s)	inside rSNPs	diseases
6	nsv540085	chr9:21472601-21608774	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	122 gene(s)	inside rSNPs	diseases
7	esv2757326	chr9:21499624-21526526	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region miRNA	105 gene(s)	inside rSNPs	diseases
8	esv2759680	chr9:21499624-21526526	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region miRNA	105 gene(s)	inside rSNPs	diseases
9	nsv892741	chr9:21517302-21551513	Genic enhancers Enhancers Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21466000-21527600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:21494800-21527600	Weak transcription	Gastric	stomach
3	chr9:21507200-21551400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr9:21507400-21527200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr9:21508000-21542000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr9:21508200-21523200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr9:21508200-21527600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr9:21508200-21527600	Weak transcription	Fetal Intestine Small	intestine
9	chr9:21510400-21527600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr9:21512200-21526400	Weak transcription	Duodenum Mucosa	Duodenum
11	chr9:21512200-21526600	Weak transcription	HSMM	muscle
12	chr9:21512800-21527000	Weak transcription	NHLF	lung
13	chr9:21513000-21526600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr9:21514400-21527000	Weak transcription	Hela-S3	cervix
15	chr9:21514600-21519400	Weak transcription	HUVEC	blood vessel
16	chr9:21516200-21520200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr9:21516800-21542600	Weak transcription	Stomach Mucosa	stomach
18	chr9:21517600-21521600	Strong transcription	NH-A	brain
19	chr9:21517800-21519800	Weak transcription	NHDF-Ad	bronchial
20	chr9:21518200-21520200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr9:21518200-21526400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr9:21518400-21519400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr9:21518400-21520600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr9:21518600-21519400	Strong transcription	A549	lung
25	chr9:21519000-21520000	Weak transcription	Osteobl	bone
26	chr9:21519000-21521400	Strong transcription	NHEK	skin
27	chr9:21519000-21524400	Weak transcription	HMEC	breast
28	chr9:21519000-21525800	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr9:21519200-21519800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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