Variant report

Variant	rs10965008
Chromosome Location	chr9:21470464-21470465
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10491567	0.84[ASN][1000 genomes]
rs10757224	0.90[ASN][1000 genomes]
rs10811535	1.00[CEU][hapmap]
rs10811542	0.84[EUR][1000 genomes]
rs10811545	0.84[EUR][1000 genomes]
rs10811546	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs10811549	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10811551	1.00[CEU][hapmap];0.92[CHB][hapmap];0.86[JPT][hapmap];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10811555	0.83[ASN][1000 genomes]
rs10811556	0.83[ASN][1000 genomes]
rs10811557	0.84[CHB][hapmap]
rs10964981	1.00[CEU][hapmap]
rs10964982	1.00[CEU][hapmap]
rs10964985	1.00[CEU][hapmap]
rs10964989	0.84[EUR][1000 genomes]
rs10965002	1.00[CEU][hapmap]
rs10965005	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs10965010	0.96[EUR][1000 genomes]
rs10965019	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs10965021	0.84[CHB][hapmap];0.87[CHD][hapmap]
rs10965022	0.84[CHB][hapmap]
rs10965023	0.84[CHB][hapmap]
rs10965024	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs10965029	0.90[ASN][1000 genomes]
rs10965031	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10965032	0.83[ASN][1000 genomes]
rs10965033	0.83[ASN][1000 genomes]
rs10965034	0.82[EUR][1000 genomes]
rs10965036	0.82[EUR][1000 genomes]
rs10965037	0.84[CHB][hapmap]
rs10965040	0.89[ASN][1000 genomes]
rs10965041	0.89[ASN][1000 genomes]
rs12156640	1.00[CEU][hapmap]
rs12236551	0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs12375583	0.82[EUR][1000 genomes]
rs12376959	0.90[EUR][1000 genomes]
rs12551723	0.83[ASN][1000 genomes]
rs12554691	0.83[ASN][1000 genomes]
rs1332188	0.82[EUR][1000 genomes]
rs1412396	0.84[CHB][hapmap];0.90[CHD][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs1412397	0.86[JPT][hapmap]
rs1537280	0.83[ASN][1000 genomes]
rs1537281	0.83[ASN][1000 genomes]
rs16938384	1.00[CEU][hapmap]
rs16938433	0.82[EUR][1000 genomes]
rs16938435	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2039380	0.89[ASN][1000 genomes]
rs55938615	0.84[EUR][1000 genomes]
rs56337511	0.82[EUR][1000 genomes]
rs7030231	0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs7032680	0.83[ASN][1000 genomes]
rs7034161	1.00[CEU][hapmap];0.84[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7048384	0.84[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs72703410	0.84[EUR][1000 genomes]
rs72703411	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72703417	0.82[EUR][1000 genomes]
rs72703418	0.82[EUR][1000 genomes]
rs72703419	0.82[EUR][1000 genomes]
rs72703426	0.82[EUR][1000 genomes]
rs7861480	0.85[CEU][hapmap];0.80[CHD][hapmap];0.80[GIH][hapmap]
rs9721887	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892724	chr9:20690244-21517302	Genic enhancers Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	153 gene(s)	inside rSNPs	diseases
2	esv2752289	chr9:21361957-21499624	Weak transcription Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv466297	chr9:21391698-21507589	Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv613758	chr9:21391698-21507589	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv892739	chr9:21407250-21470520	Weak transcription Bivalent Enhancer ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1030064	chr9:21455760-21524674	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA miRNA	111 gene(s)	inside rSNPs	diseases
7	nsv613759	chr9:21455814-21492506	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv1020445	chr9:21464962-21524162	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA miRNA	109 gene(s)	inside rSNPs	diseases
9	nsv1020232	chr9:21464962-21524999	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA miRNA	110 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21454800-21474400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr9:21454800-21481600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr9:21455200-21481000	Weak transcription	NHDF-Ad	bronchial
4	chr9:21455800-21481000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr9:21456000-21476600	Weak transcription	NHLF	lung
6	chr9:21462600-21474600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr9:21463000-21502200	Weak transcription	HSMM	muscle
8	chr9:21465400-21474600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr9:21466000-21473600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr9:21466000-21527600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr9:21466200-21471400	Weak transcription	NH-A	brain
12	chr9:21466400-21471000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr9:21467000-21478600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr9:21467800-21470800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr9:21468600-21477600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr9:21468800-21473400	Weak transcription	NHEK	skin
17	chr9:21469000-21476400	Weak transcription	A549	lung
18	chr9:21469000-21478200	Strong transcription	Osteobl	bone
19	chr9:21469200-21477800	Strong transcription	HMEC	breast
20	chr9:21469400-21471800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr9:21470000-21470800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr9:21470200-21472000	Strong transcription	Muscle Satellite Cultured Cells	--
23	chr9:21470200-21477800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr9:21470400-21470600	Enhancers	Brain Cingulate Gyrus	brain
25	chr9:21470400-21470800	Enhancers	Brain Substantia Nigra	brain

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