Variant report

Variant	rs1332188
Chromosome Location	chr9:21476807-21476808
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10491567	0.89[EUR][1000 genomes]
rs10811542	0.88[EUR][1000 genomes]
rs10811545	0.88[EUR][1000 genomes]
rs10811549	0.93[EUR][1000 genomes]
rs10811551	0.91[EUR][1000 genomes]
rs10811556	0.89[EUR][1000 genomes]
rs10811562	0.82[EUR][1000 genomes]
rs10811563	0.82[EUR][1000 genomes]
rs10811564	0.80[EUR][1000 genomes]
rs10964987	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10964989	0.88[EUR][1000 genomes]
rs10965002	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10965005	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10965008	0.82[EUR][1000 genomes]
rs10965010	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10965019	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10965024	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10965029	0.82[EUR][1000 genomes]
rs10965031	0.91[EUR][1000 genomes]
rs10965034	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10965036	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10965053	0.82[EUR][1000 genomes]
rs10965054	0.82[EUR][1000 genomes]
rs10965059	0.86[EUR][1000 genomes]
rs10965063	0.80[EUR][1000 genomes]
rs1125488	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11543888	0.80[EUR][1000 genomes]
rs12375583	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12376959	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12377379	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12378286	0.82[EUR][1000 genomes]
rs12378990	0.82[EUR][1000 genomes]
rs12379382	0.82[EUR][1000 genomes]
rs12379709	0.82[EUR][1000 genomes]
rs12379721	0.82[EUR][1000 genomes]
rs16938433	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16938435	0.91[EUR][1000 genomes]
rs16938448	0.82[EUR][1000 genomes]
rs2039380	0.89[EUR][1000 genomes]
rs2383190	0.81[EUR][1000 genomes]
rs55683539	0.82[EUR][1000 genomes]
rs55835613	0.86[EUR][1000 genomes]
rs55938615	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56106002	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56122777	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56337511	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7032680	0.89[EUR][1000 genomes]
rs72703410	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72703411	0.95[EUR][1000 genomes]
rs72703417	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72703418	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72703419	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72703426	0.95[EUR][1000 genomes]
rs72703445	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72703447	0.82[EUR][1000 genomes]
rs72703449	0.82[EUR][1000 genomes]
rs72703450	0.82[EUR][1000 genomes]
rs9644855	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892724	chr9:20690244-21517302	Genic enhancers Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	153 gene(s)	inside rSNPs	diseases
2	esv2752289	chr9:21361957-21499624	Weak transcription Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv466297	chr9:21391698-21507589	Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv613758	chr9:21391698-21507589	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv1030064	chr9:21455760-21524674	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA miRNA	111 gene(s)	inside rSNPs	diseases
6	nsv613759	chr9:21455814-21492506	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1020445	chr9:21464962-21524162	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA miRNA	109 gene(s)	inside rSNPs	diseases
8	nsv1020232	chr9:21464962-21524999	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA miRNA	110 gene(s)	inside rSNPs	diseases
9	nsv892740	chr9:21471499-21551513	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA miRNA	110 gene(s)	inside rSNPs	diseases
10	nsv1031432	chr9:21472601-21608774	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	122 gene(s)	inside rSNPs	diseases
11	nsv540085	chr9:21472601-21608774	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	122 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21454800-21481600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr9:21455200-21481000	Weak transcription	NHDF-Ad	bronchial
3	chr9:21455800-21481000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr9:21463000-21502200	Weak transcription	HSMM	muscle
5	chr9:21466000-21527600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr9:21467000-21478600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr9:21468600-21477600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr9:21469000-21478200	Strong transcription	Osteobl	bone
9	chr9:21469200-21477800	Strong transcription	HMEC	breast
10	chr9:21470200-21477800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr9:21471400-21477800	Strong transcription	NH-A	brain
12	chr9:21471600-21505600	Weak transcription	HUVEC	blood vessel
13	chr9:21474400-21477000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr9:21475000-21481000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr9:21475000-21485600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr9:21475400-21478000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr9:21475400-21481000	Weak transcription	NHEK	skin
18	chr9:21475800-21477400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr9:21476400-21477200	Strong transcription	A549	lung
20	chr9:21476400-21478400	Strong transcription	Muscle Satellite Cultured Cells	--
21	chr9:21476600-21477400	Strong transcription	NHLF	lung
22	chr9:21476600-21477800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr9:21476600-21481200	Weak transcription	Stomach Mucosa	stomach

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