Variant report

Variant	rs10491567
Chromosome Location	chr9:21510160-21510161
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10757224	0.92[ASN][1000 genomes]
rs10811535	0.85[CEU][hapmap]
rs10811546	0.92[CHB][hapmap]
rs10811549	0.95[EUR][1000 genomes]
rs10811551	0.85[CEU][hapmap];0.93[CHB][hapmap];0.93[EUR][1000 genomes]
rs10811555	0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10811556	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10811557	0.92[CHB][hapmap];0.84[JPT][hapmap]
rs10811562	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10811563	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10811564	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10964981	1.00[CEU][hapmap]
rs10964982	0.85[CEU][hapmap]
rs10964985	1.00[CEU][hapmap]
rs10964990	0.85[CHB][hapmap]
rs10965002	1.00[CEU][hapmap]
rs10965005	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs10965008	1.00[CEU][hapmap];0.92[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs10965019	0.82[CEU][hapmap];0.89[EUR][1000 genomes]
rs10965021	0.92[CHB][hapmap]
rs10965022	0.86[CHB][hapmap]
rs10965023	0.86[CHB][hapmap]
rs10965024	0.85[CEU][hapmap];0.89[EUR][1000 genomes]
rs10965029	0.84[EUR][1000 genomes]
rs10965031	0.93[EUR][1000 genomes]
rs10965034	0.89[EUR][1000 genomes]
rs10965036	0.89[EUR][1000 genomes]
rs10965037	0.93[CHB][hapmap];0.85[JPT][hapmap]
rs10965040	0.91[ASN][1000 genomes]
rs10965041	0.93[ASN][1000 genomes]
rs10965050	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10965053	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10965054	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10965059	0.89[EUR][1000 genomes]
rs10965063	0.82[EUR][1000 genomes]
rs1125488	0.91[EUR][1000 genomes]
rs11543888	0.82[EUR][1000 genomes]
rs12236551	0.86[CHB][hapmap]
rs12375583	0.89[EUR][1000 genomes]
rs12376959	0.81[EUR][1000 genomes]
rs12377379	0.89[EUR][1000 genomes]
rs12378286	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12378990	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12379382	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12379709	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12379721	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1332188	0.89[EUR][1000 genomes]
rs1412396	0.92[CHB][hapmap]
rs1412397	0.86[CHB][hapmap]
rs16938384	0.85[CEU][hapmap]
rs16938433	0.89[EUR][1000 genomes]
rs16938435	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16938448	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2039380	0.91[EUR][1000 genomes]
rs55683539	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55835613	0.89[EUR][1000 genomes]
rs56122777	0.89[EUR][1000 genomes]
rs56337511	0.89[EUR][1000 genomes]
rs7026731	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7032680	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7034161	1.00[CEU][hapmap];0.92[CHB][hapmap];0.86[JPT][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7041183	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7048384	0.93[CHB][hapmap]
rs72703410	0.87[EUR][1000 genomes]
rs72703411	0.93[EUR][1000 genomes]
rs72703417	0.89[EUR][1000 genomes]
rs72703418	0.89[EUR][1000 genomes]
rs72703419	0.89[EUR][1000 genomes]
rs72703426	0.89[EUR][1000 genomes]
rs72703442	0.85[AMR][1000 genomes]
rs72703445	0.89[EUR][1000 genomes]
rs72703447	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72703449	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72703450	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7861480	0.85[CEU][hapmap]
rs9644855	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892724	chr9:20690244-21517302	Genic enhancers Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	153 gene(s)	inside rSNPs	diseases
2	nsv1030064	chr9:21455760-21524674	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA miRNA	111 gene(s)	inside rSNPs	diseases
3	nsv1020445	chr9:21464962-21524162	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA miRNA	109 gene(s)	inside rSNPs	diseases
4	nsv1020232	chr9:21464962-21524999	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA miRNA	110 gene(s)	inside rSNPs	diseases
5	nsv892740	chr9:21471499-21551513	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA miRNA	110 gene(s)	inside rSNPs	diseases
6	nsv1031432	chr9:21472601-21608774	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	122 gene(s)	inside rSNPs	diseases
7	nsv540085	chr9:21472601-21608774	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	122 gene(s)	inside rSNPs	diseases
8	esv2757326	chr9:21499624-21526526	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region miRNA	105 gene(s)	inside rSNPs	diseases
9	esv2759680	chr9:21499624-21526526	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region miRNA	105 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21466000-21527600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:21494800-21527600	Weak transcription	Gastric	stomach
3	chr9:21504800-21510200	Enhancers	HMEC	breast
4	chr9:21505000-21510200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr9:21505200-21510200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr9:21507200-21516800	Weak transcription	Small Intestine	intestine
7	chr9:21507200-21551400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr9:21507400-21527200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr9:21508000-21511600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr9:21508000-21511600	Weak transcription	HSMM	muscle
11	chr9:21508000-21542000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr9:21508200-21511400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr9:21508200-21511600	Weak transcription	NHLF	lung
14	chr9:21508200-21511800	Weak transcription	Placenta	Placenta
15	chr9:21508200-21523200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr9:21508200-21527600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr9:21508200-21527600	Weak transcription	Fetal Intestine Small	intestine
18	chr9:21508400-21512000	Genic enhancers	A549	lung
19	chr9:21508600-21517600	Weak transcription	Fetal Intestine Large	intestine
20	chr9:21508800-21510200	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr9:21509000-21510800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr9:21509000-21511000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr9:21509000-21511600	Weak transcription	Duodenum Mucosa	Duodenum
24	chr9:21509200-21510400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr9:21509400-21510200	Weak transcription	NH-A	brain
26	chr9:21509400-21511000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr9:21509400-21511200	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr9:21509400-21511800	Weak transcription	HUVEC	blood vessel
29	chr9:21509400-21514200	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr9:21509400-21514600	Weak transcription	NHDF-Ad	bronchial
31	chr9:21509800-21510400	Strong transcription	Osteobl	bone
32	chr9:21509800-21514400	Genic enhancers	NHEK	skin
33	chr9:21510000-21514400	Strong transcription	Hela-S3	cervix

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links