Variant report

Variant	rs10964985
Chromosome Location	chr9:21416492-21416493
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10811535	1.00[CEU][hapmap]
rs10811538	0.97[EUR][1000 genomes]
rs10811551	1.00[CEU][hapmap]
rs10964981	1.00[CEU][hapmap];0.88[TSI][hapmap]
rs10964982	1.00[CEU][hapmap]
rs10964986	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10965002	1.00[CEU][hapmap];0.85[MEX][hapmap];0.80[EUR][1000 genomes]
rs10965005	1.00[CEU][hapmap]
rs10965008	1.00[CEU][hapmap]
rs10965019	1.00[CEU][hapmap]
rs10965024	1.00[CEU][hapmap]
rs12156640	1.00[CEU][hapmap]
rs12379502	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1332180	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16938384	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs2383190	0.80[EUR][1000 genomes]
rs35888770	0.85[ASN][1000 genomes]
rs56106002	0.80[EUR][1000 genomes]
rs7034161	1.00[CEU][hapmap]
rs7861480	0.85[CEU][hapmap]
rs7867089	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892724	chr9:20690244-21517302	Genic enhancers Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	153 gene(s)	inside rSNPs	diseases
2	esv2752289	chr9:21361957-21499624	Weak transcription Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv466297	chr9:21391698-21507589	Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv613758	chr9:21391698-21507589	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv892739	chr9:21407250-21470520	Weak transcription Bivalent Enhancer ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21412800-21417800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:21414400-21416600	Enhancers	Hela-S3	cervix
3	chr9:21414800-21420200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr9:21415800-21420200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr9:21416000-21416600	Enhancers	Gastric	stomach
6	chr9:21416000-21416600	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr9:21416000-21416600	Flanking Active TSS	A549	lung
8	chr9:21416000-21419000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr9:21416000-21419000	Weak transcription	Muscle Satellite Cultured Cells	--

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