Variant report

Variant	rs1332180
Chromosome Location	chr9:21413085-21413086
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10811535	1.00[CEU][hapmap]
rs10811538	0.81[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs10811542	0.82[EUR][1000 genomes]
rs10811545	0.82[EUR][1000 genomes]
rs10811551	1.00[CEU][hapmap]
rs10964981	1.00[ASW][hapmap];1.00[CEU][hapmap];0.93[LWK][hapmap];0.88[TSI][hapmap]
rs10964982	1.00[CEU][hapmap]
rs10964985	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10964986	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10964987	0.86[EUR][1000 genomes]
rs10964989	0.82[EUR][1000 genomes]
rs10965002	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs10965005	1.00[CEU][hapmap]
rs10965008	1.00[CEU][hapmap]
rs10965019	1.00[CEU][hapmap]
rs10965024	1.00[CEU][hapmap]
rs12156640	1.00[CEU][hapmap]
rs12379502	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16938384	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs55938615	0.82[EUR][1000 genomes]
rs7034161	1.00[CEU][hapmap]
rs7861480	0.85[CEU][hapmap]
rs7867089	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892724	chr9:20690244-21517302	Genic enhancers Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	153 gene(s)	inside rSNPs	diseases
2	esv2752289	chr9:21361957-21499624	Weak transcription Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv892738	chr9:21371264-21413085	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv466297	chr9:21391698-21507589	Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv613758	chr9:21391698-21507589	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv892739	chr9:21407250-21470520	Weak transcription Bivalent Enhancer ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21412000-21414000	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr9:21412800-21414000	Bivalent Enhancer	Primary B cells from peripheral blood	blood
3	chr9:21412800-21417800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr9:21413000-21413400	Enhancers	Primary B cells from cord blood	blood
5	chr9:21413000-21413600	Weak transcription	Brain Hippocampus Middle	brain
6	chr9:21413000-21413600	Weak transcription	GM12878-XiMat	blood
7	chr9:21413000-21413800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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