Variant report

Variant	rs10811565
Chromosome Location	chr9:21536913-21536914
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10811555	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10811557	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10811562	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10811563	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10811564	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10811566	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10811568	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10965049	0.86[ASN][1000 genomes]
rs10965050	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10965053	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10965054	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10965060	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12378286	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12378990	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12379382	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12379709	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12379721	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs16938448	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs55683539	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7026731	0.81[AMR][1000 genomes]
rs7041183	0.81[AMR][1000 genomes]
rs72703442	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72703444	0.83[EUR][1000 genomes]
rs72703447	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs72703448	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs72703449	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs72703450	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9644855	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892740	chr9:21471499-21551513	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA miRNA	110 gene(s)	inside rSNPs	diseases
2	nsv1031432	chr9:21472601-21608774	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	122 gene(s)	inside rSNPs	diseases
3	nsv540085	chr9:21472601-21608774	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	122 gene(s)	inside rSNPs	diseases
4	nsv892741	chr9:21517302-21551513	Genic enhancers Enhancers Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21507200-21551400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr9:21508000-21542000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr9:21516800-21542600	Weak transcription	Stomach Mucosa	stomach
4	chr9:21528800-21542000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr9:21529000-21551400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr9:21531600-21542600	Weak transcription	Duodenum Mucosa	Duodenum
7	chr9:21532200-21542800	Weak transcription	NHLF	lung
8	chr9:21532400-21542000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr9:21533200-21542600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr9:21534000-21542000	Weak transcription	HUVEC	blood vessel
11	chr9:21534000-21543000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr9:21534000-21544200	Weak transcription	NHDF-Ad	bronchial
13	chr9:21534400-21548200	Weak transcription	HSMM	muscle
14	chr9:21535200-21537400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr9:21535600-21542000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr9:21536000-21543000	Weak transcription	NH-A	brain
17	chr9:21536200-21542200	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr9:21536400-21542000	Weak transcription	Fetal Intestine Small	intestine
19	chr9:21536400-21542000	Weak transcription	Osteobl	bone
20	chr9:21536400-21544400	Weak transcription	Hela-S3	cervix
21	chr9:21536400-21546800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr9:21536400-21552200	Weak transcription	Gastric	stomach
23	chr9:21536600-21542000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr9:21536600-21542000	Weak transcription	A549	lung
25	chr9:21536600-21542000	Weak transcription	HMEC	breast
26	chr9:21536600-21542600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr9:21536600-21548400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr9:21536600-21549600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr9:21536800-21542000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr9:21536800-21542000	Weak transcription	NHEK	skin
31	chr9:21536800-21542800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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