Variant report

Variant	rs10965051
Chromosome Location	chr9:21530102-21530103
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10811546	0.92[CHB][hapmap];0.86[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10811551	0.85[CHB][hapmap]
rs10811557	0.92[CHB][hapmap];0.92[JPT][hapmap];0.92[ASN][1000 genomes]
rs10811570	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10964990	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs10965000	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10965001	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10965012	1.00[EUR][1000 genomes]
rs10965013	1.00[EUR][1000 genomes]
rs10965017	1.00[EUR][1000 genomes]
rs10965018	1.00[EUR][1000 genomes]
rs10965020	0.84[CHB][hapmap];1.00[EUR][1000 genomes]
rs10965021	0.92[CHB][hapmap];1.00[EUR][1000 genomes]
rs10965022	0.93[CHB][hapmap];1.00[EUR][1000 genomes]
rs10965023	0.93[CHB][hapmap];1.00[EUR][1000 genomes]
rs10965032	1.00[EUR][1000 genomes]
rs10965033	1.00[EUR][1000 genomes]
rs10965037	0.86[CHB][hapmap];0.92[JPT][hapmap];1.00[EUR][1000 genomes]
rs10965045	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10965046	0.91[ASN][1000 genomes]
rs10965049	0.85[JPT][hapmap]
rs11532905	1.00[EUR][1000 genomes]
rs12236551	0.93[CHB][hapmap];0.86[JPT][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs12551723	1.00[EUR][1000 genomes]
rs12554691	1.00[EUR][1000 genomes]
rs1412396	0.92[CHB][hapmap];0.92[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1412397	0.92[CHB][hapmap];0.86[JPT][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1537280	1.00[EUR][1000 genomes]
rs1537281	1.00[EUR][1000 genomes]
rs16938425	1.00[EUR][1000 genomes]
rs16938434	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2039381	1.00[EUR][1000 genomes]
rs4978119	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7026731	0.93[ASN][1000 genomes]
rs7030231	0.86[JPT][hapmap]
rs7034161	0.92[CHB][hapmap]
rs7041183	0.92[ASN][1000 genomes]
rs7048384	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs72703442	0.91[ASN][1000 genomes]
rs9644820	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9644856	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9721887	1.00[EUR][1000 genomes]
rs991793	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892740	chr9:21471499-21551513	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA miRNA	110 gene(s)	inside rSNPs	diseases
2	nsv1031432	chr9:21472601-21608774	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	122 gene(s)	inside rSNPs	diseases
3	nsv540085	chr9:21472601-21608774	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	122 gene(s)	inside rSNPs	diseases
4	nsv892741	chr9:21517302-21551513	Genic enhancers Enhancers Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21507200-21551400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr9:21508000-21542000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr9:21516800-21542600	Weak transcription	Stomach Mucosa	stomach
4	chr9:21522600-21532600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr9:21522600-21533200	Strong transcription	NH-A	brain
6	chr9:21524400-21532200	Strong transcription	Osteobl	bone
7	chr9:21525600-21534000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr9:21525800-21530800	Strong transcription	Muscle Satellite Cultured Cells	--
9	chr9:21526200-21532400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr9:21526400-21534800	Strong transcription	NHEK	skin
11	chr9:21526600-21530200	Strong transcription	HSMM	muscle
12	chr9:21526600-21533000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr9:21526800-21534800	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr9:21527000-21531000	Strong transcription	NHDF-Ad	bronchial
15	chr9:21527000-21531200	Strong transcription	NHLF	lung
16	chr9:21527800-21536600	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr9:21528200-21531600	Strong transcription	Duodenum Mucosa	Duodenum
18	chr9:21528200-21532800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr9:21528600-21531800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr9:21528800-21530400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr9:21528800-21530800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr9:21528800-21531000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr9:21528800-21532200	Strong transcription	HMEC	breast
24	chr9:21528800-21533000	Strong transcription	Hela-S3	cervix
25	chr9:21528800-21533400	Weak transcription	Fetal Intestine Large	intestine
26	chr9:21528800-21535800	Weak transcription	Gastric	stomach
27	chr9:21528800-21542000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr9:21529000-21530200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr9:21529000-21531000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr9:21529000-21532000	Weak transcription	HUVEC	blood vessel
31	chr9:21529000-21533200	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr9:21529000-21534800	Weak transcription	Esophagus	oesophagus
33	chr9:21529000-21551400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr9:21529600-21530200	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
35	chr9:21529800-21530200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr9:21530000-21530800	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr9:21530000-21532000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr9:21530000-21532000	Strong transcription	A549	lung

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