Variant report

Variant	rs10811570
Chromosome Location	chr9:21547544-21547545
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10811546	0.84[CHB][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10811557	0.84[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs10964990	0.92[CHB][hapmap]
rs10965000	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10965001	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10965012	1.00[EUR][1000 genomes]
rs10965013	1.00[EUR][1000 genomes]
rs10965017	1.00[EUR][1000 genomes]
rs10965018	1.00[EUR][1000 genomes]
rs10965020	1.00[EUR][1000 genomes]
rs10965021	0.84[CHB][hapmap];1.00[EUR][1000 genomes]
rs10965022	0.85[CHB][hapmap];1.00[EUR][1000 genomes]
rs10965023	0.85[CHB][hapmap];1.00[EUR][1000 genomes]
rs10965032	1.00[EUR][1000 genomes]
rs10965033	1.00[EUR][1000 genomes]
rs10965037	0.92[JPT][hapmap];1.00[EUR][1000 genomes]
rs10965045	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10965046	0.87[ASN][1000 genomes]
rs10965051	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11532905	1.00[EUR][1000 genomes]
rs12236551	0.85[CHB][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs12551723	1.00[EUR][1000 genomes]
rs12554691	1.00[EUR][1000 genomes]
rs1412396	0.84[CHB][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1412397	0.85[CHB][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1537280	1.00[EUR][1000 genomes]
rs1537281	1.00[EUR][1000 genomes]
rs16938425	1.00[EUR][1000 genomes]
rs16938434	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2039381	1.00[EUR][1000 genomes]
rs4978119	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7026731	0.87[ASN][1000 genomes]
rs7034161	0.84[CHB][hapmap]
rs7041183	0.88[ASN][1000 genomes]
rs72703442	0.87[ASN][1000 genomes]
rs9644820	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9644856	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9721887	1.00[EUR][1000 genomes]
rs991793	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892740	chr9:21471499-21551513	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA miRNA	110 gene(s)	inside rSNPs	diseases
2	nsv1031432	chr9:21472601-21608774	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	122 gene(s)	inside rSNPs	diseases
3	nsv540085	chr9:21472601-21608774	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	122 gene(s)	inside rSNPs	diseases
4	nsv892741	chr9:21517302-21551513	Genic enhancers Enhancers Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1029634	chr9:21542970-21765286	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21507200-21551400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr9:21529000-21551400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr9:21534400-21548200	Weak transcription	HSMM	muscle
4	chr9:21536400-21552200	Weak transcription	Gastric	stomach
5	chr9:21536600-21548400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr9:21536600-21549600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr9:21542200-21551800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr9:21543400-21551600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr9:21543600-21548200	Weak transcription	Duodenum Mucosa	Duodenum
10	chr9:21543600-21549000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr9:21543600-21552200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr9:21544600-21548800	Weak transcription	Fetal Intestine Small	intestine
13	chr9:21545000-21550000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr9:21545200-21548600	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr9:21545400-21548400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr9:21545600-21549000	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr9:21545600-21555600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr9:21546000-21548400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr9:21546400-21553600	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr9:21546800-21548200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr9:21546800-21548400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr9:21546800-21548400	Enhancers	Osteobl	bone
23	chr9:21546800-21548800	Enhancers	HUVEC	blood vessel
24	chr9:21546800-21549000	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr9:21546800-21549400	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr9:21547000-21547800	Transcr. at gene 5' and 3'	A549	lung
27	chr9:21547000-21548400	Enhancers	Hela-S3	cervix
28	chr9:21547000-21550600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr9:21547000-21553400	Transcr. at gene 5' and 3'	HMEC	breast
30	chr9:21547200-21548000	Weak transcription	NHLF	lung
31	chr9:21547200-21548400	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr9:21547200-21548400	Weak transcription	Stomach Mucosa	stomach
33	chr9:21547200-21548600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr9:21547400-21547800	Weak transcription	NHDF-Ad	bronchial
35	chr9:21547400-21548000	Weak transcription	NH-A	brain
36	chr9:21547400-21548400	Enhancers	Muscle Satellite Cultured Cells	--
37	chr9:21547400-21548400	Genic enhancers	NHEK	skin
38	chr9:21547400-21551000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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