Variant report

Variant	rs10492461
Chromosome Location	chr13:30532661-30532662
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs11838968	1.00[ASN][1000 genomes]
rs11839078	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11839379	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11840419	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11840423	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11841787	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11842111	1.00[ASN][1000 genomes]
rs11842198	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11842394	1.00[ASN][1000 genomes]
rs11842819	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1547161	1.00[EUR][1000 genomes]
rs1557088	1.00[ASN][1000 genomes]
rs17074013	1.00[ASN][1000 genomes]
rs17074016	1.00[ASN][1000 genomes]
rs17074063	1.00[ASN][1000 genomes]
rs17074065	1.00[ASN][1000 genomes]
rs17074067	1.00[ASN][1000 genomes]
rs17074166	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17074176	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1807336	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1998729	1.00[ASN][1000 genomes]
rs4238129	1.00[ASN][1000 genomes]
rs4578499	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4769786	1.00[ASN][1000 genomes]
rs4769787	1.00[ASN][1000 genomes]
rs4769788	1.00[ASN][1000 genomes]
rs4769790	1.00[ASN][1000 genomes]
rs4769791	1.00[ASN][1000 genomes]
rs496557	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs524939	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs525768	1.00[CEU][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs552465	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61285944	1.00[ASN][1000 genomes]
rs638278	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs661331	1.00[ASN][1000 genomes]
rs729285	1.00[CEU][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73159369	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73159387	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73450320	1.00[ASN][1000 genomes]
rs73450326	1.00[ASN][1000 genomes]
rs73450335	1.00[ASN][1000 genomes]
rs73450337	1.00[ASN][1000 genomes]
rs73450342	1.00[ASN][1000 genomes]
rs73450344	1.00[ASN][1000 genomes]
rs73450347	1.00[ASN][1000 genomes]
rs73450349	1.00[ASN][1000 genomes]
rs73450391	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs745251	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs745252	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9506248	1.00[ASN][1000 genomes]
rs9508600	1.00[ASN][1000 genomes]
rs9508603	1.00[ASN][1000 genomes]
rs9508605	1.00[ASN][1000 genomes]
rs9508611	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9508613	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3520592	chr13:30243601-30648554	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv3520593	chr13:30243601-30648554	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv510598	chr13:30476386-30542798	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30529600-30538000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr13:30530600-30533800	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr13:30530600-30534000	Enhancers	H9 Cell Line	embryonic stem cell
4	chr13:30530600-30534000	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr13:30530600-30534000	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr13:30530600-30534000	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr13:30530800-30533600	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr13:30530800-30533800	Enhancers	H1 Cell Line	embryonic stem cell
9	chr13:30531000-30534200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr13:30531600-30533200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr13:30531600-30533400	Enhancers	Primary T cells from cord blood	blood
12	chr13:30531600-30533800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr13:30531800-30532800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr13:30531800-30533000	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr13:30531800-30533600	Enhancers	Primary T cells fromperipheralblood	blood
16	chr13:30532000-30532800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr13:30532000-30533400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
18	chr13:30532200-30533000	Enhancers	Primary T killer memory cells from peripheral blood	blood
19	chr13:30532200-30533200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr13:30532200-30533200	Enhancers	Primary T helper naive cells from peripheral blood	blood
21	chr13:30532200-30533400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
22	chr13:30532200-30533600	Enhancers	Primary T helper cells fromperipheralblood	blood
23	chr13:30532400-30533000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr13:30532400-30533400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
25	chr13:30532400-30533800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr13:30532400-30535200	Weak transcription	Brain Germinal Matrix	brain
27	chr13:30532400-30535200	Weak transcription	Fetal Brain Male	brain
28	chr13:30532600-30533400	Enhancers	Primary T helper cells PMA-I stimulated	--
29	chr13:30532600-30533600	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr13:30532600-30533800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr13:30532600-30534000	Enhancers	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links