Variant report

Variant	rs11842198
Chromosome Location	chr13:30528377-30528378
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:30522245..30525192-chr13:30528354..30530435,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-UBL3-6	chr13:30528302-30528980	l_804_chr13:30525362-30528980_brain

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10492461	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11838968	1.00[ASN][1000 genomes]
rs11839078	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11839379	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11840419	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11840423	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11841787	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11842111	1.00[ASN][1000 genomes]
rs11842394	0.92[YRI][hapmap];1.00[ASN][1000 genomes]
rs11842819	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1547161	0.96[EUR][1000 genomes]
rs1557088	1.00[ASN][1000 genomes]
rs17074013	1.00[ASN][1000 genomes]
rs17074016	1.00[ASN][1000 genomes]
rs17074063	1.00[ASN][1000 genomes]
rs17074065	1.00[ASN][1000 genomes]
rs17074067	0.92[YRI][hapmap];1.00[ASN][1000 genomes]
rs17074118	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs17074120	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs17074166	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17074176	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1807336	0.93[EUR][1000 genomes]
rs1998729	1.00[ASN][1000 genomes]
rs4238129	1.00[ASN][1000 genomes]
rs4578499	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4769783	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs4769786	1.00[ASN][1000 genomes]
rs4769787	1.00[ASN][1000 genomes]
rs4769788	1.00[ASN][1000 genomes]
rs4769790	1.00[ASN][1000 genomes]
rs4769791	1.00[ASN][1000 genomes]
rs496557	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs524939	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs525768	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs552465	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61285944	1.00[ASN][1000 genomes]
rs638278	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs661331	1.00[ASN][1000 genomes]
rs729285	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73159369	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73159387	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73450320	1.00[ASN][1000 genomes]
rs73450326	1.00[ASN][1000 genomes]
rs73450335	1.00[ASN][1000 genomes]
rs73450337	1.00[ASN][1000 genomes]
rs73450342	1.00[ASN][1000 genomes]
rs73450344	1.00[ASN][1000 genomes]
rs73450347	1.00[ASN][1000 genomes]
rs73450349	1.00[ASN][1000 genomes]
rs73450391	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs745251	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs745252	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9506248	1.00[ASN][1000 genomes]
rs9508600	1.00[ASN][1000 genomes]
rs9508603	1.00[ASN][1000 genomes]
rs9508605	1.00[ASN][1000 genomes]
rs9508611	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9508613	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3520592	chr13:30243601-30648554	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv3520593	chr13:30243601-30648554	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv510598	chr13:30476386-30542798	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30518600-30528600	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr13:30523200-30529400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr13:30526800-30528400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
4	chr13:30527400-30528400	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr13:30527600-30529200	Enhancers	Fetal Thymus	thymus
6	chr13:30527600-30529600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr13:30527800-30528400	Enhancers	Primary B cells from peripheral blood	blood
8	chr13:30527800-30528800	Enhancers	Adipose Nuclei	Adipose
9	chr13:30528000-30528400	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
10	chr13:30528000-30528800	Flanking Active TSS	Primary B cells from cord blood	blood
11	chr13:30528000-30529000	Flanking Active TSS	Primary T cells fromperipheralblood	blood
12	chr13:30528000-30529000	Enhancers	Primary hematopoietic stem cells	blood
13	chr13:30528000-30529000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
14	chr13:30528000-30529000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
15	chr13:30528000-30529200	Flanking Active TSS	Primary T cells from cord blood	blood
16	chr13:30528000-30529600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
17	chr13:30528200-30528400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
18	chr13:30528200-30528400	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr13:30528200-30528400	Flanking Active TSS	Duodenum Mucosa	Duodenum
20	chr13:30528200-30528600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
21	chr13:30528200-30528600	Flanking Active TSS	Thymus	Thymus
22	chr13:30528200-30528800	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr13:30528200-30528800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr13:30528200-30528800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
25	chr13:30528200-30528800	Enhancers	Sigmoid Colon	Sigmoid Colon
26	chr13:30528200-30529000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
27	chr13:30528200-30529000	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
28	chr13:30528200-30529000	Active TSS	Rectal Mucosa Donor 29	rectum
29	chr13:30528200-30529200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood

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