Variant report

Variant	rs17074016
Chromosome Location	chr13:30486096-30486097
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:30482306..30489173-chr13:30491895..30500288,16	MCF-7	breast:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10492461	1.00[ASN][1000 genomes]
rs11838968	1.00[ASN][1000 genomes]
rs11839078	1.00[ASN][1000 genomes]
rs11840419	1.00[ASN][1000 genomes]
rs11840423	1.00[ASN][1000 genomes]
rs11841787	1.00[ASN][1000 genomes]
rs11842111	1.00[ASN][1000 genomes]
rs11842198	1.00[ASN][1000 genomes]
rs11842394	0.91[TSI][hapmap];1.00[ASN][1000 genomes]
rs11842819	1.00[ASN][1000 genomes]
rs1557088	1.00[ASN][1000 genomes]
rs17074013	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17074063	1.00[ASN][1000 genomes]
rs17074065	0.91[TSI][hapmap];1.00[ASN][1000 genomes]
rs17074067	0.91[TSI][hapmap];1.00[ASN][1000 genomes]
rs17074166	1.00[ASN][1000 genomes]
rs17074176	1.00[ASN][1000 genomes]
rs1998729	1.00[ASN][1000 genomes]
rs4238129	1.00[ASN][1000 genomes]
rs4578499	1.00[ASN][1000 genomes]
rs4769786	1.00[ASN][1000 genomes]
rs4769787	1.00[ASN][1000 genomes]
rs4769788	1.00[ASN][1000 genomes]
rs4769790	1.00[ASN][1000 genomes]
rs4769791	1.00[ASN][1000 genomes]
rs496557	1.00[ASN][1000 genomes]
rs524939	1.00[ASN][1000 genomes]
rs525768	1.00[ASN][1000 genomes]
rs552465	1.00[ASN][1000 genomes]
rs61285944	1.00[ASN][1000 genomes]
rs638278	1.00[ASN][1000 genomes]
rs661331	1.00[ASN][1000 genomes]
rs729285	1.00[ASN][1000 genomes]
rs73159369	1.00[ASN][1000 genomes]
rs73159387	1.00[ASN][1000 genomes]
rs73450320	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73450326	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73450335	1.00[ASN][1000 genomes]
rs73450337	1.00[ASN][1000 genomes]
rs73450342	1.00[ASN][1000 genomes]
rs73450344	1.00[ASN][1000 genomes]
rs73450347	1.00[ASN][1000 genomes]
rs73450349	1.00[ASN][1000 genomes]
rs745251	1.00[ASN][1000 genomes]
rs745252	1.00[ASN][1000 genomes]
rs9506248	1.00[ASN][1000 genomes]
rs9508600	1.00[ASN][1000 genomes]
rs9508603	1.00[ASN][1000 genomes]
rs9508605	1.00[ASN][1000 genomes]
rs9508611	1.00[ASN][1000 genomes]
rs9508613	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3520592	chr13:30243601-30648554	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv3520593	chr13:30243601-30648554	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv510598	chr13:30476386-30542798	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30476800-30497600	Weak transcription	Right Atrium	heart
2	chr13:30477000-30492400	Weak transcription	Pancreas	Pancrea
3	chr13:30481400-30494000	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr13:30483600-30489200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr13:30484800-30486200	Weak transcription	HSMM	muscle
6	chr13:30484800-30491200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr13:30484800-30491200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr13:30484800-30492400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr13:30485000-30494200	Weak transcription	A549	lung
10	chr13:30485200-30486400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr13:30485600-30486200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr13:30485800-30486400	Enhancers	Stomach Mucosa	stomach
13	chr13:30486000-30486400	Enhancers	Adipose Nuclei	Adipose
14	chr13:30486000-30486400	Enhancers	Esophagus	oesophagus
15	chr13:30486000-30486400	Enhancers	Fetal Muscle Trunk	muscle
16	chr13:30486000-30486400	Enhancers	Fetal Muscle Leg	muscle
17	chr13:30486000-30486400	Enhancers	Placenta	Placenta
18	chr13:30486000-30486400	Enhancers	Gastric	stomach
19	chr13:30486000-30486400	Enhancers	Placenta Amnion	Placenta Amnion
20	chr13:30486000-30486600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr13:30486000-30486600	Enhancers	NHDF-Ad	bronchial

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