Variant report

Variant	rs10492957
Chromosome Location	chr1:217124731-217124732
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10492954	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10495038	0.82[MEX][hapmap];0.89[TSI][hapmap];0.82[EUR][1000 genomes]
rs10735491	0.80[AMR][1000 genomes]
rs11117732	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11117733	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11117737	0.84[ASW][hapmap];0.85[CEU][hapmap];0.80[GIH][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11117738	0.84[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11117745	0.81[GIH][hapmap]
rs11572472	1.00[ASW][hapmap];1.00[CEU][hapmap];0.93[GIH][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12025193	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12029369	1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12040129	0.87[TSI][hapmap];0.82[EUR][1000 genomes]
rs12043713	0.87[ASW][hapmap];0.87[MEX][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12758444	0.82[EUR][1000 genomes]
rs1339219	0.84[TSI][hapmap];0.81[EUR][1000 genomes]
rs1816565	1.00[ASW][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2028097	1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs5017053	0.87[MEX][hapmap];0.89[TSI][hapmap];0.82[EUR][1000 genomes]
rs6698252	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6698256	1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7517404	0.81[EUR][1000 genomes]
rs7520445	1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs7526109	1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10492957	CENPF	cis	parietal	SCAN
rs10492957	LQK1	cis	cerebellum	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:217111000-217125400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr1:217118800-217125400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr1:217119600-217125400	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr1:217119600-217125400	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr1:217119800-217126000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr1:217120400-217126200	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr1:217121200-217125400	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr1:217121400-217125600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr1:217122400-217146200	Weak transcription	Pancreas	Pancrea
10	chr1:217124600-217125200	Enhancers	Fetal Heart	heart

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