Variant report

Variant	rs6698252
Chromosome Location	chr1:217140512-217140513
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs1030853	0.85[ASN][1000 genomes]
rs10492954	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10492957	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10495038	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11117732	0.81[AFR][1000 genomes]
rs11117733	0.81[AFR][1000 genomes]
rs11117735	0.86[EUR][1000 genomes]
rs11117737	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11117738	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11572472	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12025193	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12029369	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12040129	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12043713	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12121739	0.83[EUR][1000 genomes]
rs12758444	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1339214	0.90[ASN][1000 genomes]
rs1339215	0.88[ASN][1000 genomes]
rs1339216	0.88[ASN][1000 genomes]
rs1339219	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1436885	0.99[ASN][1000 genomes]
rs1436887	0.97[ASN][1000 genomes]
rs1561189	0.97[ASN][1000 genomes]
rs1561190	0.97[ASN][1000 genomes]
rs1816565	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1836964	0.90[ASN][1000 genomes]
rs1865920	0.97[ASN][1000 genomes]
rs1865921	0.97[ASN][1000 genomes]
rs2028097	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2118148	0.90[ASN][1000 genomes]
rs2118149	0.99[ASN][1000 genomes]
rs2118150	0.99[ASN][1000 genomes]
rs2164612	0.87[ASN][1000 genomes]
rs2437880	0.97[ASN][1000 genomes]
rs2576207	0.88[ASN][1000 genomes]
rs2576210	0.90[ASN][1000 genomes]
rs2576211	0.98[ASN][1000 genomes]
rs2576212	0.89[ASN][1000 genomes]
rs2576214	0.97[ASN][1000 genomes]
rs2576216	0.96[ASN][1000 genomes]
rs2576217	0.97[ASN][1000 genomes]
rs2576218	0.97[ASN][1000 genomes]
rs2576219	0.97[ASN][1000 genomes]
rs2576220	0.96[ASN][1000 genomes]
rs2576221	0.97[ASN][1000 genomes]
rs2576222	0.97[ASN][1000 genomes]
rs2576223	0.97[ASN][1000 genomes]
rs2576224	0.97[ASN][1000 genomes]
rs2576225	0.88[ASN][1000 genomes]
rs2789554	0.90[ASN][1000 genomes]
rs2789561	0.90[ASN][1000 genomes]
rs2789563	0.90[ASN][1000 genomes]
rs2818776	0.97[ASN][1000 genomes]
rs2818778	0.98[ASN][1000 genomes]
rs2818779	0.90[ASN][1000 genomes]
rs2818780	0.97[ASN][1000 genomes]
rs2818781	0.97[ASN][1000 genomes]
rs2818782	0.97[ASN][1000 genomes]
rs2818783	0.96[ASN][1000 genomes]
rs2818784	0.97[ASN][1000 genomes]
rs2818785	0.97[ASN][1000 genomes]
rs2818786	0.97[ASN][1000 genomes]
rs2818788	0.97[ASN][1000 genomes]
rs34247036	0.89[EUR][1000 genomes]
rs5017053	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6657447	0.98[ASN][1000 genomes]
rs6698256	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7517404	0.92[EUR][1000 genomes]
rs7520445	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7526109	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv468149	chr1:217134966-217203091	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv549204	chr1:217134966-217203091	Weak transcription Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:217122400-217146200	Weak transcription	Pancreas	Pancrea

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