Variant report

Variant	rs10494936
Chromosome Location	chr1:211528806-211528807
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:211527896..211530358-chr1:211538566..211540580,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10863888	0.81[JPT][hapmap];0.86[YRI][hapmap];0.80[ASN][1000 genomes]
rs2292483	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4951522	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4951523	0.81[JPT][hapmap];0.87[YRI][hapmap];0.84[ASN][1000 genomes]
rs4951744	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4951745	0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6682599	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6684874	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7550702	0.81[JPT][hapmap];0.91[YRI][hapmap];0.84[ASN][1000 genomes]

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211505000-211530200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr1:211505800-211529800	Weak transcription	Ovary	ovary
3	chr1:211509800-211529200	Weak transcription	Rectal Smooth Muscle	rectum
4	chr1:211509800-211544200	Weak transcription	HUVEC	blood vessel
5	chr1:211510600-211555400	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr1:211511600-211533000	Weak transcription	Left Ventricle	heart
7	chr1:211514800-211552200	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr1:211515000-211555000	Weak transcription	Hela-S3	cervix
9	chr1:211515000-211555800	Weak transcription	Esophagus	oesophagus
10	chr1:211515200-211543200	Weak transcription	Colonic Mucosa	Colon
11	chr1:211515400-211548400	Weak transcription	Stomach Mucosa	stomach
12	chr1:211519400-211549000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr1:211519600-211530000	Weak transcription	NH-A	brain
14	chr1:211519800-211532400	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr1:211519800-211532400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr1:211519800-211544800	Weak transcription	Fetal Kidney	kidney
17	chr1:211519800-211547400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr1:211519800-211548600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr1:211520800-211533800	Weak transcription	Colon Smooth Muscle	Colon
20	chr1:211521000-211529800	Weak transcription	HSMMtube	muscle
21	chr1:211521200-211530200	Weak transcription	Brain Anterior Caudate	brain
22	chr1:211521200-211550200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr1:211521600-211555200	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr1:211523600-211542800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr1:211525000-211555600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr1:211525400-211529200	Weak transcription	Placenta	Placenta
27	chr1:211525400-211532400	Weak transcription	A549	lung
28	chr1:211525400-211550200	Weak transcription	NHDF-Ad	bronchial
29	chr1:211525400-211555000	Weak transcription	Fetal Lung	lung
30	chr1:211525600-211548200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr1:211525600-211550200	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr1:211525800-211529400	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr1:211525800-211529600	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr1:211526000-211529000	Weak transcription	NHLF	lung
35	chr1:211526400-211530000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr1:211526400-211542200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr1:211526400-211546400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr1:211526600-211529000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr1:211526600-211531400	Strong transcription	Stomach Smooth Muscle	stomach
40	chr1:211526600-211534800	Strong transcription	Fetal Muscle Trunk	muscle
41	chr1:211526600-211555400	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr1:211526800-211529400	Weak transcription	Fetal Intestine Small	intestine
43	chr1:211526800-211529800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
44	chr1:211526800-211530000	Strong transcription	Pancreas	Pancrea
45	chr1:211526800-211550800	Weak transcription	Small Intestine	intestine
46	chr1:211527000-211529000	Genic enhancers	Primary T cells from cord blood	blood
47	chr1:211527000-211530000	Enhancers	HepG2	liver
48	chr1:211527000-211530200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr1:211527000-211530600	Strong transcription	Duodenum Smooth Muscle	Duodenum
50	chr1:211527000-211530600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland

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