The 2.0 version of rSNPBase

Variant report

Variant rs6682599
Chromosome Location chr1:211522427-211522428
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:72 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:211505000-211530200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
2 chr1:211505800-211529800 Weak transcription Ovary ovary
3 chr1:211509800-211529200 Weak transcription Rectal Smooth Muscle rectum
4 chr1:211509800-211544200 Weak transcription HUVEC blood vessel
5 chr1:211510600-211555400 Weak transcription Skeletal Muscle Male skeletal muscle
6 chr1:211510800-211524000 Genic enhancers Primary B cells from peripheral blood blood
7 chr1:211511400-211528600 Weak transcription Right Atrium heart
8 chr1:211511600-211533000 Weak transcription Left Ventricle heart
9 chr1:211513200-211526600 Weak transcription Stomach Smooth Muscle stomach
10 chr1:211513400-211524800 Weak transcription A549 lung
11 chr1:211513400-211527000 Weak transcription Duodenum Smooth Muscle Duodenum
12 chr1:211513400-211528800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
13 chr1:211514400-211526600 Weak transcription Fetal Muscle Trunk muscle
14 chr1:211514800-211527000 Weak transcription Aorta Aorta
15 chr1:211514800-211552200 Weak transcription Skeletal Muscle Female skeletal muscle
16 chr1:211515000-211526400 Weak transcription Duodenum Mucosa Duodenum
17 chr1:211515000-211527000 Weak transcription Adipose Nuclei Adipose
18 chr1:211515000-211555000 Weak transcription Hela-S3 cervix
19 chr1:211515000-211555800 Weak transcription Esophagus oesophagus
20 chr1:211515200-211543200 Weak transcription Colonic Mucosa Colon
21 chr1:211515400-211548400 Weak transcription Stomach Mucosa stomach
22 chr1:211517200-211523000 Weak transcription Thymus Thymus
23 chr1:211517600-211525000 Weak transcription Fetal Muscle Leg muscle
24 chr1:211518000-211522800 Weak transcription Rectal Mucosa Donor 31 rectum
25 chr1:211518000-211525200 Weak transcription Sigmoid Colon Sigmoid Colon
26 chr1:211518000-211526400 Weak transcription Rectal Mucosa Donor 29 rectum
27 chr1:211518000-211526400 Weak transcription Spleen Spleen
28 chr1:211518000-211527000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
29 chr1:211518200-211525200 Weak transcription Fetal Thymus thymus
30 chr1:211518400-211524200 Enhancers Primary T helper naive cells fromperipheralblood blood
31 chr1:211519400-211523000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
32 chr1:211519400-211549000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
33 chr1:211519600-211530000 Weak transcription NH-A brain
34 chr1:211519800-211522600 Weak transcription Breast Myoepithelial Primary Cells Breast
35 chr1:211519800-211523600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
36 chr1:211519800-211524000 Weak transcription Lung lung
37 chr1:211519800-211526600 Weak transcription Fetal Stomach stomach
38 chr1:211519800-211526600 Weak transcription Pancreas Pancrea
39 chr1:211519800-211528800 Weak transcription Gastric stomach
40 chr1:211519800-211532400 Weak transcription H1 Cell Line embryonic stem cell
41 chr1:211519800-211532400 Weak transcription iPS-18 Cell Line embryonic stem cell
42 chr1:211519800-211544800 Weak transcription Fetal Kidney kidney
43 chr1:211519800-211547400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
44 chr1:211519800-211548600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
45 chr1:211520000-211527000 Weak transcription Fetal Adrenal Gland Adrenal Gland
46 chr1:211520400-211526200 Enhancers Primary T helper memory cells from peripheral blood 2 blood
47 chr1:211520800-211522600 Weak transcription Primary T killer memory cells from peripheral blood blood
48 chr1:211520800-211523000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
49 chr1:211520800-211533800 Weak transcription Colon Smooth Muscle Colon
50 chr1:211521000-211522600 Weak transcription Primary T cells from cord blood blood

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Last update: Aug 31, 2015