Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11120761	1.00[EUR][1000 genomes]
rs12057526	1.00[EUR][1000 genomes]
rs12067103	1.00[EUR][1000 genomes]
rs12073672	1.00[EUR][1000 genomes]
rs12085974	1.00[EUR][1000 genomes]
rs12091266	1.00[EUR][1000 genomes]
rs12091601	1.00[EUR][1000 genomes]
rs17026120	1.00[GIH][hapmap]
rs58809093	1.00[EUR][1000 genomes]
rs59175279	1.00[EUR][1000 genomes]
rs60833551	1.00[EUR][1000 genomes]
rs61574190	1.00[EUR][1000 genomes]
rs6668781	1.00[EUR][1000 genomes]
rs6679594	1.00[EUR][1000 genomes]
rs700017	1.00[GIH][hapmap]
rs700019	1.00[GIH][hapmap]
rs700025	1.00[GIH][hapmap]
rs73096657	1.00[EUR][1000 genomes]
rs73098604	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74141506	1.00[EUR][1000 genomes]
rs74141508	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006504	chr1:215890460-216642124	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv535288	chr1:215890460-216642124	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv873176	chr1:216249570-216363137	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv1006028	chr1:216268796-216432545	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:216347000-216356200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:216349000-216355600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr1:216351400-216356200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr1:216351400-216356400	Weak transcription	Fetal Stomach	stomach
5	chr1:216352200-216356000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr1:216352400-216356000	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr1:216352400-216356200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr1:216353000-216355600	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr1:216353200-216356000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr1:216354600-216355600	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr1:216354800-216356200	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr1:216354800-216356200	Enhancers	iPS-20b Cell Line	embryonic stem cell

Quick Search: