Variant report

Variant	rs74141506
Chromosome Location	chr1:216314929-216314930
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:216312061..216313973-chr1:216314332..216316595,2	K562	blood:
2	chr1:216308823..216311948-chr1:216312152..216315770,3	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10495020	1.00[EUR][1000 genomes]
rs11120761	1.00[EUR][1000 genomes]
rs12057526	1.00[EUR][1000 genomes]
rs12067103	1.00[EUR][1000 genomes]
rs12073672	1.00[EUR][1000 genomes]
rs12085974	1.00[EUR][1000 genomes]
rs12091266	1.00[EUR][1000 genomes]
rs12091601	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13374778	1.00[EUR][1000 genomes]
rs368107	0.83[AFR][1000 genomes]
rs448588	0.83[AFR][1000 genomes]
rs453273	0.83[AFR][1000 genomes]
rs58809093	1.00[EUR][1000 genomes]
rs59175279	1.00[EUR][1000 genomes]
rs59271780	1.00[EUR][1000 genomes]
rs594799	0.80[AFR][1000 genomes]
rs60833551	1.00[EUR][1000 genomes]
rs61574190	1.00[EUR][1000 genomes]
rs6668781	1.00[EUR][1000 genomes]
rs6679594	1.00[EUR][1000 genomes]
rs73096657	1.00[EUR][1000 genomes]
rs73098604	1.00[EUR][1000 genomes]
rs74141508	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006504	chr1:215890460-216642124	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv535288	chr1:215890460-216642124	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv873176	chr1:216249570-216363137	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv999211	chr1:216268796-216329336	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1006028	chr1:216268796-216432545	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:216312200-216315000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
2	chr1:216313800-216315000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr1:216313800-216315000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:216314000-216315000	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr1:216314000-216315000	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr1:216314000-216315200	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr1:216314000-216315200	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr1:216314000-216316800	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr1:216314000-216317800	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr1:216314200-216315000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr1:216314400-216315000	Enhancers	H1 Cell Line	embryonic stem cell
12	chr1:216314400-216318000	Weak transcription	Fetal Lung	lung
13	chr1:216314600-216315000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr1:216314600-216315000	Enhancers	H9 Cell Line	embryonic stem cell
15	chr1:216314600-216315000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr1:216314800-216317400	Weak transcription	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links