Variant report

Variant	rs10495159
Chromosome Location	chr1:221135671-221135672
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:221130934..221133035-chr1:221134689..221137532,2	K562	blood:
2	chr1:221130934..221133697-chr1:221134689..221137747,4	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10779417	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10779418	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10863573	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11118632	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12022930	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12140805	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1335927	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1335929	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1414519	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1414520	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2484703	0.96[CEU][hapmap];0.82[CHB][hapmap];0.95[TSI][hapmap];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2484704	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2484706	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2784276	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2784279	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2784280	0.90[EUR][1000 genomes]
rs2784281	0.90[EUR][1000 genomes]
rs2807832	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2807875	0.90[EUR][1000 genomes]
rs2807876	0.90[EUR][1000 genomes]
rs2807877	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2807881	0.96[CEU][hapmap];0.82[CHB][hapmap];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2992647	0.90[EUR][1000 genomes]
rs2992649	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2992650	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3013553	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3013554	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3013556	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3013558	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6678632	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221133600-221135800	Enhancers	Muscle Satellite Cultured Cells	--
2	chr1:221133800-221136200	Enhancers	NHDF-Ad	bronchial
3	chr1:221133800-221137000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:221134200-221136000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr1:221134400-221137200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr1:221134600-221136000	Enhancers	K562	blood
7	chr1:221134600-221136200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr1:221134600-221136200	Enhancers	HSMMtube	muscle
9	chr1:221134800-221136000	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr1:221134800-221136000	Enhancers	Liver	Liver
11	chr1:221134800-221136200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr1:221134800-221136200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr1:221134800-221136200	Enhancers	HSMM	muscle
14	chr1:221134800-221136200	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr1:221134800-221136200	Enhancers	NH-A	brain
16	chr1:221134800-221136400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr1:221134800-221136400	Enhancers	NHLF	lung
18	chr1:221135200-221135800	Enhancers	Aorta	Aorta
19	chr1:221135200-221136000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr1:221135200-221136000	Enhancers	Adipose Nuclei	Adipose
21	chr1:221135200-221136800	Enhancers	HMEC	breast
22	chr1:221135400-221136400	Enhancers	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links