Variant report

Variant	rs10779417
Chromosome Location	chr1:221126914-221126915
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10495159	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10779418	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10863573	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11118632	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12022930	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12140805	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1335927	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1335929	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1414519	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1414520	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2484703	0.96[CEU][hapmap];0.95[TSI][hapmap];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2484704	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2484706	0.91[EUR][1000 genomes]
rs2784276	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2784279	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2784280	0.91[EUR][1000 genomes]
rs2784281	0.91[EUR][1000 genomes]
rs2807832	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2807875	0.91[EUR][1000 genomes]
rs2807876	0.91[EUR][1000 genomes]
rs2807877	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2807881	0.96[CEU][hapmap];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2992647	0.89[EUR][1000 genomes]
rs2992649	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2992650	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3013553	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3013554	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3013556	0.88[EUR][1000 genomes]
rs3013558	0.88[EUR][1000 genomes]
rs6678632	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	esv3342228	chr1:221124554-221127302	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3332551	chr1:221124679-221127177	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221126400-221132400	Enhancers	Muscle Satellite Cultured Cells	--
2	chr1:221126600-221131600	Enhancers	HSMM	muscle
3	chr1:221126600-221131600	Enhancers	HSMMtube	muscle
4	chr1:221126600-221132600	Enhancers	NHDF-Ad	bronchial
5	chr1:221126800-221127000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr1:221126800-221130600	Weak transcription	K562	blood

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