Variant report

Variant	rs11118632
Chromosome Location	chr1:221142346-221142347
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10495159	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10779417	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10779418	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10863573	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12022930	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12140805	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1335927	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1335929	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1414519	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1414520	0.88[EUR][1000 genomes]
rs2484703	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2484704	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2484706	0.86[EUR][1000 genomes]
rs2784276	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2784279	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2784280	0.85[EUR][1000 genomes]
rs2784281	0.85[EUR][1000 genomes]
rs2807832	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2807875	0.85[EUR][1000 genomes]
rs2807876	0.85[EUR][1000 genomes]
rs2807877	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2807881	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2992647	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2992649	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2992650	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3013553	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3013554	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3013556	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3013558	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6678632	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv873199	chr1:221136672-221451217	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221140600-221143400	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr1:221140800-221143400	Weak transcription	NHLF	lung
3	chr1:221141000-221143000	Weak transcription	NHDF-Ad	bronchial
4	chr1:221141200-221143600	Weak transcription	Osteobl	bone
5	chr1:221142000-221143400	Weak transcription	Psoas Muscle	Psoas

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