Variant report

Variant	rs10496442
Chromosome Location	chr2:113636862-113636863
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:113629413..113632406-chr2:113634310..113637023,2	K562	blood:
2	chr2:113635520..113637327-chr2:113638337..113640428,2	K562	blood:
3	chr2:113636674..113639363-chr2:113640556..113642756,3	K562	blood:
4	chr2:113483575..113485899-chr2:113635548..113637538,2	MCF-7	breast:
5	chr2:113636464..113639122-chr2:113640556..113642756,3	K562	blood:

Variant related genes	Relation type
ENSG00000144130	Chromatin interaction

rs_ID	r²[population]
rs10192907	0.90[ASN][1000 genomes]
rs13023868	0.83[JPT][hapmap]
rs17042512	1.00[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];0.95[ASN][1000 genomes]
rs2708915	0.95[ASN][1000 genomes]
rs2708930	0.85[ASN][1000 genomes]
rs2723176	0.83[JPT][hapmap]
rs2723186	0.83[JPT][hapmap]
rs4369864	1.00[CHB][hapmap];0.81[JPT][hapmap];0.90[ASN][1000 genomes]
rs4439960	0.95[ASN][1000 genomes]
rs4547538	0.85[ASN][1000 genomes]
rs7577574	0.83[JPT][hapmap]

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:113629200-113637800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:113629200-113643200	Weak transcription	Right Atrium	heart
3	chr2:113632800-113641600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr2:113632800-113644400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr2:113633000-113640600	Enhancers	HMEC	breast
6	chr2:113634000-113640200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr2:113635000-113638000	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr2:113635200-113637000	Weak transcription	Hela-S3	cervix
9	chr2:113635200-113637200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr2:113635200-113637200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr2:113635200-113637800	Weak transcription	Esophagus	oesophagus
12	chr2:113635400-113637200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr2:113635400-113637200	Weak transcription	NH-A	brain
14	chr2:113635400-113637600	Weak transcription	HUVEC	blood vessel
15	chr2:113635400-113638200	Enhancers	NHEK	skin
16	chr2:113635600-113637800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr2:113635600-113637800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr2:113635800-113637400	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr2:113635800-113637400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr2:113635800-113637400	Weak transcription	HSMM	muscle
21	chr2:113635800-113637400	Weak transcription	Osteobl	bone
22	chr2:113635800-113638000	Weak transcription	HSMMtube	muscle
23	chr2:113636000-113637200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr2:113636400-113639200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
25	chr2:113636400-113640400	Enhancers	Primary hematopoietic stem cells short term culture	blood
26	chr2:113636600-113638000	Weak transcription	Brain Angular Gyrus	brain
27	chr2:113636600-113638600	Enhancers	Fetal Thymus	thymus
28	chr2:113636600-113638800	Enhancers	GM12878-XiMat	blood
29	chr2:113636800-113637600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr2:113636800-113639600	Bivalent Enhancer	HepG2	liver
31	chr2:113636800-113640000	Enhancers	Primary monocytes fromperipheralblood	blood
32	chr2:113636800-113640200	Enhancers	NHDF-Ad	bronchial

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