Variant report

Variant	rs4439960
Chromosome Location	chr2:113627789-113627790
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:113626918..113628807-chr2:113631546..113634388,2	K562	blood:
2	chr2:113626794..113629154-chr2:113645648..113647958,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10192907	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10496442	0.95[ASN][1000 genomes]
rs1143630	0.81[AMR][1000 genomes]
rs11884436	0.98[EUR][1000 genomes]
rs17042498	0.98[EUR][1000 genomes]
rs17042509	0.92[EUR][1000 genomes]
rs17042512	1.00[ASN][1000 genomes]
rs17042517	0.98[EUR][1000 genomes]
rs2708915	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2708930	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2723157	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2723158	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4369864	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4547538	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4619621	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4849126	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4849127	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56100202	0.89[EUR][1000 genomes]
rs57799055	0.98[EUR][1000 genomes]
rs6542102	0.82[AMR][1000 genomes]

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:113624400-113628400	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr2:113624400-113628400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr2:113624800-113629200	Enhancers	Stomach Mucosa	stomach
4	chr2:113624800-113629200	Enhancers	HMEC	breast
5	chr2:113625000-113629000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr2:113625000-113629000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr2:113625000-113629200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr2:113625000-113629800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr2:113625400-113629200	Enhancers	Rectal Mucosa Donor 31	rectum
10	chr2:113625600-113628200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr2:113625600-113628400	Enhancers	Rectal Mucosa Donor 29	rectum
12	chr2:113625600-113629200	Enhancers	Colonic Mucosa	Colon
13	chr2:113626000-113628200	Weak transcription	Gastric	stomach
14	chr2:113626000-113629000	Weak transcription	Right Atrium	heart
15	chr2:113626000-113629400	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr2:113626200-113628800	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr2:113626200-113634000	Weak transcription	Placenta	Placenta
18	chr2:113626400-113627800	Enhancers	K562	blood
19	chr2:113626400-113629200	Enhancers	Primary hematopoietic stem cells	blood
20	chr2:113626400-113629400	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr2:113626400-113629400	Enhancers	Fetal Intestine Large	intestine
22	chr2:113626600-113627800	Enhancers	Muscle Satellite Cultured Cells	--
23	chr2:113626600-113628800	Enhancers	Duodenum Mucosa	Duodenum
24	chr2:113626600-113629400	Enhancers	Fetal Intestine Small	intestine
25	chr2:113626800-113627800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr2:113626800-113627800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr2:113626800-113627800	Enhancers	Adipose Nuclei	Adipose
28	chr2:113626800-113627800	Enhancers	HSMM	muscle
29	chr2:113626800-113627800	Enhancers	HSMMtube	muscle
30	chr2:113626800-113628400	Enhancers	Brain Inferior Temporal Lobe	brain
31	chr2:113626800-113628800	Enhancers	Breast Myoepithelial Primary Cells	Breast
32	chr2:113626800-113629000	Enhancers	Brain Hippocampus Middle	brain
33	chr2:113626800-113629200	Enhancers	Brain Substantia Nigra	brain
34	chr2:113627000-113627800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr2:113627000-113628200	Weak transcription	Esophagus	oesophagus
36	chr2:113627000-113628200	Weak transcription	Small Intestine	intestine
37	chr2:113627000-113628400	Weak transcription	Lung	lung
38	chr2:113627000-113629000	Enhancers	Duodenum Smooth Muscle	Duodenum
39	chr2:113627200-113627800	Enhancers	Brain Germinal Matrix	brain
40	chr2:113627200-113627800	Enhancers	Fetal Heart	heart
41	chr2:113627200-113627800	Enhancers	Fetal Lung	lung
42	chr2:113627200-113628600	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr2:113627200-113628800	Enhancers	Brain Cingulate Gyrus	brain
44	chr2:113627200-113628800	Enhancers	Hela-S3	cervix
45	chr2:113627400-113627800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr2:113627400-113627800	Enhancers	Brain Angular Gyrus	brain
47	chr2:113627400-113628000	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr2:113627400-113628400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr2:113627400-113628800	Weak transcription	Pancreas	Pancrea
50	chr2:113627600-113628000	Weak transcription	Sigmoid Colon	Sigmoid Colon

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