Variant report

Variant	rs2723158
Chromosome Location	chr2:113627351-113627352
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:113625233..113627510-chr2:113637612..113639730,2	MCF-7	breast:
2	chr2:113624073..113627729-chr2:113629143..113631937,4	K562	blood:
3	chr2:113625681..113627663-chr2:113649211..113651985,2	MCF-7	breast:
4	chr2:113626918..113628807-chr2:113631546..113634388,2	K562	blood:
5	chr2:113626794..113629154-chr2:113645648..113647958,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10192907	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1143630	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs11884436	0.98[EUR][1000 genomes]
rs17042498	0.98[EUR][1000 genomes]
rs17042509	0.92[EUR][1000 genomes]
rs17042517	0.98[EUR][1000 genomes]
rs2708915	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2708930	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2723157	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4369864	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4439960	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4547538	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4619621	0.93[AMR][1000 genomes]
rs4849126	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4849127	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56100202	0.89[EUR][1000 genomes]
rs57799055	0.98[EUR][1000 genomes]
rs6542102	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes]

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:113624400-113628400	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr2:113624400-113628400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr2:113624800-113629200	Enhancers	Stomach Mucosa	stomach
4	chr2:113624800-113629200	Enhancers	HMEC	breast
5	chr2:113625000-113627600	Enhancers	NHDF-Ad	bronchial
6	chr2:113625000-113629000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr2:113625000-113629000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr2:113625000-113629200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr2:113625000-113629800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr2:113625400-113629200	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr2:113625600-113628200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr2:113625600-113628400	Enhancers	Rectal Mucosa Donor 29	rectum
13	chr2:113625600-113629200	Enhancers	Colonic Mucosa	Colon
14	chr2:113625800-113627400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr2:113626000-113627600	Enhancers	Sigmoid Colon	Sigmoid Colon
16	chr2:113626000-113628200	Weak transcription	Gastric	stomach
17	chr2:113626000-113629000	Weak transcription	Right Atrium	heart
18	chr2:113626000-113629400	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr2:113626200-113628800	Enhancers	Monocytes-CD14+_RO01746	blood
20	chr2:113626200-113634000	Weak transcription	Placenta	Placenta
21	chr2:113626400-113627400	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr2:113626400-113627800	Enhancers	K562	blood
23	chr2:113626400-113629200	Enhancers	Primary hematopoietic stem cells	blood
24	chr2:113626400-113629400	Enhancers	Primary hematopoietic stem cells short term culture	blood
25	chr2:113626400-113629400	Enhancers	Fetal Intestine Large	intestine
26	chr2:113626600-113627400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
27	chr2:113626600-113627600	Enhancers	HUVEC	blood vessel
28	chr2:113626600-113627600	Enhancers	Osteobl	bone
29	chr2:113626600-113627800	Enhancers	Muscle Satellite Cultured Cells	--
30	chr2:113626600-113628800	Enhancers	Duodenum Mucosa	Duodenum
31	chr2:113626600-113629400	Enhancers	Fetal Intestine Small	intestine
32	chr2:113626800-113627400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr2:113626800-113627400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr2:113626800-113627600	Enhancers	NH-A	brain
35	chr2:113626800-113627600	Flanking Active TSS	NHEK	skin
36	chr2:113626800-113627800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr2:113626800-113627800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr2:113626800-113627800	Enhancers	Adipose Nuclei	Adipose
39	chr2:113626800-113627800	Enhancers	HSMM	muscle
40	chr2:113626800-113627800	Enhancers	HSMMtube	muscle
41	chr2:113626800-113628400	Enhancers	Brain Inferior Temporal Lobe	brain
42	chr2:113626800-113628800	Enhancers	Breast Myoepithelial Primary Cells	Breast
43	chr2:113626800-113629000	Enhancers	Brain Hippocampus Middle	brain
44	chr2:113626800-113629200	Enhancers	Brain Substantia Nigra	brain
45	chr2:113627000-113627600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr2:113627000-113627800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr2:113627000-113628200	Weak transcription	Esophagus	oesophagus
48	chr2:113627000-113628200	Weak transcription	Small Intestine	intestine
49	chr2:113627000-113628400	Weak transcription	Lung	lung
50	chr2:113627000-113629000	Enhancers	Duodenum Smooth Muscle	Duodenum

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