Variant report

Variant	rs17042509
Chromosome Location	chr2:113633009-113633010
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11884436	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17042498	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17042517	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2708915	0.92[EUR][1000 genomes]
rs2708930	0.87[EUR][1000 genomes]
rs2723157	0.92[EUR][1000 genomes]
rs2723158	0.92[EUR][1000 genomes]
rs4369864	0.83[EUR][1000 genomes]
rs4439960	0.92[EUR][1000 genomes]
rs4547538	0.83[EUR][1000 genomes]
rs4849126	0.83[EUR][1000 genomes]
rs4849127	0.83[EUR][1000 genomes]
rs56100202	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs57799055	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:113626200-113634000	Weak transcription	Placenta	Placenta
2	chr2:113629000-113634000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr2:113629200-113637800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr2:113629200-113643200	Weak transcription	Right Atrium	heart
5	chr2:113632800-113634200	Enhancers	NHEK	skin
6	chr2:113632800-113641600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr2:113632800-113644400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr2:113633000-113640600	Enhancers	HMEC	breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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