Variant report

Variant	rs2708915
Chromosome Location	chr2:113628206-113628207
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:113626918..113628807-chr2:113631546..113634388,2	K562	blood:
2	chr2:113626794..113629154-chr2:113645648..113647958,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10192907	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10496442	1.00[CHB][hapmap];0.81[JPT][hapmap];0.95[ASN][1000 genomes]
rs1143630	1.00[CEU][hapmap];0.81[AMR][1000 genomes]
rs11884436	0.98[EUR][1000 genomes]
rs17042498	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs17042509	0.92[EUR][1000 genomes]
rs17042512	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17042517	0.98[EUR][1000 genomes]
rs2708930	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2723157	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2723158	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4369864	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4439960	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4547538	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4619621	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4849126	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4849127	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56100202	0.89[EUR][1000 genomes]
rs57799055	0.98[EUR][1000 genomes]
rs6542102	0.82[AMR][1000 genomes]

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:113624400-113628400	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr2:113624400-113628400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr2:113624800-113629200	Enhancers	Stomach Mucosa	stomach
4	chr2:113624800-113629200	Enhancers	HMEC	breast
5	chr2:113625000-113629000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr2:113625000-113629000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr2:113625000-113629200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr2:113625000-113629800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr2:113625400-113629200	Enhancers	Rectal Mucosa Donor 31	rectum
10	chr2:113625600-113628400	Enhancers	Rectal Mucosa Donor 29	rectum
11	chr2:113625600-113629200	Enhancers	Colonic Mucosa	Colon
12	chr2:113626000-113629000	Weak transcription	Right Atrium	heart
13	chr2:113626000-113629400	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr2:113626200-113628800	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr2:113626200-113634000	Weak transcription	Placenta	Placenta
16	chr2:113626400-113629200	Enhancers	Primary hematopoietic stem cells	blood
17	chr2:113626400-113629400	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr2:113626400-113629400	Enhancers	Fetal Intestine Large	intestine
19	chr2:113626600-113628800	Enhancers	Duodenum Mucosa	Duodenum
20	chr2:113626600-113629400	Enhancers	Fetal Intestine Small	intestine
21	chr2:113626800-113628400	Enhancers	Brain Inferior Temporal Lobe	brain
22	chr2:113626800-113628800	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr2:113626800-113629000	Enhancers	Brain Hippocampus Middle	brain
24	chr2:113626800-113629200	Enhancers	Brain Substantia Nigra	brain
25	chr2:113627000-113628400	Weak transcription	Lung	lung
26	chr2:113627000-113629000	Enhancers	Duodenum Smooth Muscle	Duodenum
27	chr2:113627200-113628600	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr2:113627200-113628800	Enhancers	Brain Cingulate Gyrus	brain
29	chr2:113627200-113628800	Enhancers	Hela-S3	cervix
30	chr2:113627400-113628400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr2:113627400-113628800	Weak transcription	Pancreas	Pancrea
32	chr2:113627600-113629200	Enhancers	NHEK	skin
33	chr2:113627800-113628400	Weak transcription	Brain Germinal Matrix	brain
34	chr2:113627800-113628800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr2:113627800-113628800	Weak transcription	HSMMtube	muscle
36	chr2:113627800-113628800	Weak transcription	K562	blood
37	chr2:113628000-113628600	Enhancers	iPS-20b Cell Line	embryonic stem cell
38	chr2:113628000-113629200	Enhancers	HUES48 Cell Line	embryonic stem cell
39	chr2:113628000-113629200	Enhancers	HUES6 Cell Line	embryonic stem cell
40	chr2:113628000-113629200	Enhancers	Sigmoid Colon	Sigmoid Colon
41	chr2:113628200-113628400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr2:113628200-113628400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr2:113628200-113628400	Enhancers	Esophagus	oesophagus
44	chr2:113628200-113628600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr2:113628200-113628800	Enhancers	Fetal Lung	lung
46	chr2:113628200-113628800	Enhancers	Gastric	stomach
47	chr2:113628200-113629000	Enhancers	HUES64 Cell Line	embryonic stem cell
48	chr2:113628200-113629000	Enhancers	Brain Angular Gyrus	brain
49	chr2:113628200-113629000	Enhancers	Brain Anterior Caudate	brain
50	chr2:113628200-113629200	Enhancers	Small Intestine	intestine

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