Variant report

Variant	rs17042498
Chromosome Location	chr2:113624215-113624216
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10192907	0.85[EUR][1000 genomes]
rs1143630	1.00[CEU][hapmap]
rs11884436	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17042509	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17042517	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2708915	0.98[EUR][1000 genomes]
rs2708930	0.93[EUR][1000 genomes]
rs2723157	0.98[EUR][1000 genomes]
rs2723158	0.98[EUR][1000 genomes]
rs4369864	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs4439960	0.98[EUR][1000 genomes]
rs4547538	0.89[EUR][1000 genomes]
rs4849126	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs4849127	0.89[EUR][1000 genomes]
rs56100202	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs57799055	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:113622800-113624400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
2	chr2:113623000-113625600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr2:113623600-113624400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
4	chr2:113623600-113626800	Enhancers	Hela-S3	cervix
5	chr2:113624000-113624400	Enhancers	Stomach Mucosa	stomach
6	chr2:113624000-113625200	Weak transcription	Gastric	stomach
7	chr2:113624000-113625600	Weak transcription	Colonic Mucosa	Colon
8	chr2:113624000-113625600	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr2:113624000-113627200	Weak transcription	Brain Cingulate Gyrus	brain
10	chr2:113624200-113624400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr2:113624200-113625000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr2:113624200-113625000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr2:113624200-113625400	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr2:113624200-113626800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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