Variant report

Variant	rs10496873
Chromosome Location	chr2:141995202-141995203
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1033314	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10496876	1.00[CHB][hapmap];0.88[TSI][hapmap]
rs10496877	1.00[JPT][hapmap]
rs12615230	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs12615262	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap]
rs12616496	0.89[GIH][hapmap];0.83[TSI][hapmap]
rs12623426	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12989989	0.95[ASN][1000 genomes]
rs1401308	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1521108	0.84[CHB][hapmap]
rs16845581	0.89[GIH][hapmap];0.83[TSI][hapmap]
rs16845583	0.95[LWK][hapmap]
rs16845605	0.95[LWK][hapmap]
rs16845680	0.84[ASW][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16845691	0.84[ASW][hapmap];0.89[CHB][hapmap]
rs16845749	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap]
rs16845754	0.95[LWK][hapmap]
rs16845760	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[MKK][hapmap];0.86[TSI][hapmap];0.82[YRI][hapmap]
rs16845771	0.94[CHB][hapmap];0.89[TSI][hapmap]
rs16855028	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1851162	0.92[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs2030256	0.90[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs2090806	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs2102973	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2380968	0.89[LWK][hapmap]
rs373757	0.81[CHB][hapmap]
rs3856359	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs389593	0.83[CHB][hapmap]
rs406726	0.88[CHB][hapmap]
rs418443	0.88[CHB][hapmap]
rs419152	0.87[CHB][hapmap]
rs57567311	0.90[ASN][1000 genomes]
rs58315763	0.95[ASN][1000 genomes]
rs61438901	0.95[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs654180	0.89[CHB][hapmap];0.81[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583198	chr2:141510791-142150620	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv817518	chr2:141714174-142287302	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1003799	chr2:141803314-142033675	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1009434	chr2:141832339-142156180	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1005236	chr2:141860005-142047695	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv535948	chr2:141860005-142047695	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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