Variant report

Variant	rs12615262
Chromosome Location	chr2:142069420-142069421
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1033314	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10496873	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap]
rs10496876	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[GIH][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap]
rs10496877	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs12615230	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12616496	0.83[TSI][hapmap]
rs12623426	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12989989	0.97[ASN][1000 genomes]
rs1401308	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1521108	0.85[CHB][hapmap]
rs16845581	0.83[TSI][hapmap]
rs16845680	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.89[TSI][hapmap];0.95[ASN][1000 genomes]
rs16845691	0.89[CHB][hapmap]
rs16845749	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16845754	0.81[MKK][hapmap]
rs16845760	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.86[TSI][hapmap]
rs16845771	1.00[CEU][hapmap];0.94[CHB][hapmap];0.88[GIH][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16855028	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1851162	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2030256	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2090806	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap]
rs2102973	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs373757	0.82[CHB][hapmap]
rs3856359	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs389593	0.84[CHB][hapmap]
rs406726	0.88[CHB][hapmap]
rs418443	0.89[CHB][hapmap]
rs419152	0.88[CHB][hapmap]
rs57567311	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58315763	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61438901	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs654180	0.89[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583198	chr2:141510791-142150620	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv817518	chr2:141714174-142287302	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1009434	chr2:141832339-142156180	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv2830111	chr2:142047759-142164422	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3693337	chr2:142047759-142164422	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv875230	chr2:142055133-142119323	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
7	nsv583203	chr2:142055133-142378975	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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