Variant report

Variant	rs654180
Chromosome Location	chr2:142008500-142008501
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1033314	0.89[CHB][hapmap];0.82[ASN][1000 genomes]
rs10496873	0.89[CHB][hapmap];0.81[CHD][hapmap]
rs10496876	0.89[CHB][hapmap]
rs12615230	0.89[CHB][hapmap]
rs12615262	0.89[CHB][hapmap]
rs12623426	0.89[CHB][hapmap]
rs12989989	0.82[ASN][1000 genomes]
rs1401308	0.89[CHB][hapmap]
rs1521108	0.92[CEU][hapmap];0.95[CHB][hapmap];0.89[MEX][hapmap]
rs16845680	0.89[CHB][hapmap];0.85[CHD][hapmap];0.84[ASN][1000 genomes]
rs16845691	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap]
rs16845749	0.89[CHB][hapmap]
rs16845760	0.89[CHB][hapmap]
rs16845771	0.84[CHB][hapmap]
rs16855028	0.88[CHB][hapmap]
rs1850695	1.00[CEU][hapmap]
rs1851162	0.84[ASN][1000 genomes]
rs2030256	0.84[ASN][1000 genomes]
rs2102973	0.89[CHB][hapmap]
rs373757	1.00[CEU][hapmap];0.94[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.94[TSI][hapmap];0.95[YRI][hapmap]
rs380870	0.90[CEU][hapmap];0.88[CHB][hapmap];0.86[YRI][hapmap]
rs381144	1.00[CEU][hapmap];0.83[CHD][hapmap];0.94[GIH][hapmap];0.94[LWK][hapmap];0.82[MKK][hapmap];0.97[TSI][hapmap];0.81[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs3856359	0.89[CHB][hapmap]
rs389593	0.84[CEU][hapmap];0.94[CHB][hapmap];0.86[JPT][hapmap]
rs406726	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap]
rs418443	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap]
rs419152	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs58315763	0.82[ASN][1000 genomes]
rs642332	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583198	chr2:141510791-142150620	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv817518	chr2:141714174-142287302	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1003799	chr2:141803314-142033675	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1009434	chr2:141832339-142156180	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1005236	chr2:141860005-142047695	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv535948	chr2:141860005-142047695	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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